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Colin Dewey
Colin Dewey
Professor of Biostatistics and Medical Informatics, University of Wisconsin-Madison
Verified email at biostat.wisc.edu - Homepage
Title
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Cited by
Year
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
B Li, CN Dewey
BMC bioinformatics 12, 1-16, 2011
180572011
Initial sequencing and comparative analysis of the mouse genome
European Bioinformatics Institute: Birney Ewan 3 Goldman Nick 3 Kasprzyk ...
Nature 420 (6915), 520-562, 2002
85552002
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
76952013
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ...
nature 447 (7146), 799-816, 2007
60152007
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1
Nature 432 (7018), 695-716, 2004
29152004
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ...
Nature 428 (6982), 493-521, 2004
25202004
The ENCODE (ENCyclopedia of DNA elements) project
EA Feingold, PJ Good, MS Guyer, S Kamholz, L Liefer, K Wetterstrand, ...
Science 306 (5696), 636-640, 2004
23762004
RNA-Seq gene expression estimation with read mapping uncertainty
B Li, V Ruotti, RM Stewart, JA Thomson, CN Dewey
Bioinformatics 26 (4), 493-500, 2010
12872010
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
12072020
Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans
DJ Begun, AK Holloway, K Stevens, LDW Hillier, YP Poh, MW Hahn, ...
PLoS biology 5 (11), e310, 2007
7292007
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219-232, 2007
7142007
A genome-wide map of conserved microRNA targets in C. elegans
S Lall, D Grün, A Krek, K Chen, YL Wang, CN Dewey, P Sood, T Colombo, ...
Current biology 16 (5), 460-471, 2006
5622006
BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis
BR Larget, SK Kotha, CN Dewey, C Ané
Bioinformatics 26 (22), 2910-2911, 2010
4672010
Fast statistical alignment
RK Bradley, A Roberts, M Smoot, S Juvekar, J Do, C Dewey, I Holmes, ...
PLoS computational biology 5 (5), e1000392, 2009
4072009
Genomic Variation in Natural Populations of Drosophila melanogaster
CH Langley, K Stevens, C Cardeno, YCG Lee, DR Schrider, JE Pool, ...
Genetics 192 (2), 533-598, 2012
3582012
Evaluation of de novo transcriptome assemblies from RNA-Seq data
B Li, N Fillmore, Y Bai, M Collins, JA Thomson, R Stewart, CN Dewey
Genome biology 15, 1-21, 2014
2862014
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
2482007
Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase
P Sanchez-Vazquez, CN Dewey, N Kitten, W Ross, RL Gourse
Proceedings of the National Academy of Sciences 116 (17), 8310-8319, 2019
2092019
Gata2 cis-element is required for hematopoietic stem cell generation in the mammalian embryo
X Gao, KD Johnson, YI Chang, ME Boyer, CN Dewey, J Zhang, ...
Journal of Experimental Medicine 210 (13), 2833-2842, 2013
1702013
Rbm20 regulates titin alternative splicing as a splicing repressor
S Li, W Guo, CN Dewey, ML Greaser
Nucleic acids research 41 (4), 2659-2672, 2013
1602013
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