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Andrea Schafferhans
Andrea Schafferhans
Lecturer at Hochschule Weihenstephan Triesdorf and Postdoc in Bioinformatics at TUM
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PredictProtein—an open resource for online prediction of protein structural and functional features
G Yachdav, E Kloppmann, L Kajan, M Hecht, T Goldberg, T Hamp, ...
Nucleic acids research 42 (W1), W337-W343, 2014
6952014
Visualization of macromolecular structures
SI O'donoghue, DS Goodsell, AS Frangakis, F Jossinet, RA Laskowski, ...
Nature methods 7 (3), S42-S55, 2010
1952010
Unexpected features of the dark proteome
N Perdigão, J Heinrich, C Stolte, KS Sabir, MJ Buckley, B Tabor, B Signal, ...
Proceedings of the National Academy of Sciences 112 (52), 15898-15903, 2015
1892015
PredictProtein-predicting protein structure and function for 29 years
M Bernhofer, C Dallago, T Karl, V Satagopam, M Heinzinger, M Littmann, ...
Nucleic acids research 49 (W1), W535-W540, 2021
1842021
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
1762016
Docking ligands onto binding site representations derived from proteins built by homology modelling
A Schafferhans, G Klebe
Journal of molecular biology 307 (1), 407-427, 2001
1342001
Aquaria: simplifying discovery and insight from protein structures
SI O'donoghue, KS Sabir, M Kalemanov, C Stolte, B Wellmann, V Ho, ...
Nature methods 12 (2), 98-99, 2015
702015
Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)
K Neuhaus, R Landstorfer, L Fellner, S Simon, A Schafferhans, ...
BMC genomics 17, 1-16, 2016
362016
Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome
SM Hücker, Z Ardern, T Goldberg, A Schafferhans, M Bernhofer, ...
PloS one 12 (9), e0184119, 2017
312017
SARS‐CoV‐2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms
SI O’Donoghue, A Schafferhans, N Sikta, C Stolte, S Kaur, BK Ho, ...
Molecular systems biology 17 (9), e10079, 2021
282021
The SRS 3D module: integrating structures, sequences and features
SI O'Donoghue, JEW Meyer, A Schafferhans, K Fries
Bioinformatics 20 (15), 2476-2478, 2004
262004
The PSSH database of alignments between protein sequences and tertiary structures
A Schafferhans, JEW Meyer, SI O'Donoghue
Nucleic Acids Research 31 (1), 494-498, 2003
212003
Integrated visual analysis of protein structures, sequences, and feature data
C Stolte, KS Sabir, J Heinrich, CJ Hammang, A Schafferhans, ...
BMC bioinformatics 16, 1-13, 2015
122015
Peptide/benzodiazepine hybrids as ligands of CCKA and CCKB receptors
A Escherich, J Lutz, C Escrieut, D Fourmy, AS van Neuren, G Müller, ...
Biopolymers: Original Research on Biomolecules 56 (2), 55-76, 2000
112000
Method for organizing and depicting biological elements
S O'donoghue, K Fries, J Meyer, A Schafferhans
US Patent App. 10/250,571, 2004
92004
SARS-CoV-2 structural coverage map reveals state changes that disrupt host immunity
SI O’Donoghue, A Schafferhans, N Sikta, C Stolte, S Kaur, BK Ho, ...
82020
Dark proteins important for cellular function
A Schafferhans, SI O'Donoghue, M Heinzinger, B Rost
Proteomics 18 (21-22), 1800227, 2018
72018
Systematic modeling of SARS-CoV-2 protein structures
SI O’Donoghue, A Schafferhans, N Sikta, C Stolte, S Kaur, B Ho, ...
bioRxiv, 2020.07. 16.207308, 2020
32020
PSSH2-database of protein sequence-to-structure homologies
A Schafferhans, S O’Donoghue
Zenodo. https://doi. org/10.5281/ZENODO 4279164, 2020
32020
Biological Data Visualization (Dagstuhl Seminar 12372)
C Görg, L Hunter, J Kennedy, S O'Donoghue, JJ Van Wijk
Dagstuhl Reports 2 (9), 2013
32013
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