Elizabeth M. Glass
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The RAST Server: rapid annotations using subsystems technology
RK Aziz, D Bartels, AA Best, M DeJongh, T Disz, RA Edwards, K Formsma, ...
BMC genomics 9, 1-15, 2008
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ...
BMC bioinformatics 9, 1-8, 2008
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
MG-RAST, a metagenomics service for analysis of microbial community structure and function
KP Keegan, EM Glass, F Meyer
Microbial environmental genomics (MEG), 207-233, 2016
Staphylococcus aureus virulence genes identified by bursa aurealis mutagenesis and nematode killing
T Bae, AK Banger, A Wallace, EM Glass, F Åslund, O Schneewind, ...
Proceedings of the National Academy of Sciences 101 (33), 12312-12317, 2004
Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes
EM Glass, J Wilkening, A Wilke, D Antonopoulos, F Meyer
Cold Spring Harbor Protocols 2010 (1), pdb. prot5368, 2010
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
A Wilke, T Harrison, J Wilkening, D Field, EM Glass, N Kyrpides, ...
BMC bioinformatics 13, 1-5, 2012
The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010
JA Gilbert, F Meyer, J Jansson, J Gordon, N Pace, J Tiedje, R Ley, ...
Standards in genomic sciences 3, 249-253, 2010
The MG-RAST metagenomics database and portal in 2015
A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ...
Nucleic acids research 44 (D1), D590-D594, 2016
Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants
EC Claud, KP Keegan, JM Brulc, L Lu, D Bartels, E Glass, EB Chang, ...
Microbiome 1, 1-11, 2013
From genomics to metagenomics
N Desai, D Antonopoulos, JA Gilbert, EM Glass, F Meyer
Current opinion in biotechnology 23 (1), 72-76, 2012
Identification of Francisella tularensis Himar1-Based Transposon Mutants Defective for Replication in Macrophages
TM Maier, MS Casey, RH Becker, CW Dorsey, EM Glass, N Maltsev, ...
Infection and immunity 75 (11), 5376-5389, 2007
Bacillus anthracis Sortase A (SrtA) Anchors LPXTG Motif-Containing Surface Proteins to the Cell Wall Envelope
AH Gaspar, LA Marraffini, EM Glass, KL DeBord, H Ton-That, ...
Journal of bacteriology 187 (13), 4646-4655, 2005
Generating a Collection of Insertion Mutations in the Staphylococcus aureus Genome Using bursa aurealis
T Bae, EM Glass, O Schneewind, D Missiakas
Microbial gene essentiality: protocols and bioinformatics, 103-116, 2008
A RESTful API for Accessing Microbial Community Data for MG-RAST
A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ...
PLoS Comput Biol 11 (1), 2015
PUMA2—grid-based high-throughput analysis of genomes and metabolic pathways
N Maltsev, E Glass, D Sulakhe, A Rodriguez, MH Syed, T Bompada, ...
Nucleic acids research 34 (suppl_1), D369-D372, 2006
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
The complete genome sequence for putative H2‐ and S‐oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer‐derived metagenome
KM Handley, D Bartels, EJ O'Loughlin, KH Williams, WL Trimble, ...
Environmental microbiology 16 (11), 3443-3462, 2014
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