| The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017 | 1249 | 2017 |
| Macromolecular modeling and design in Rosetta: recent methods and frameworks JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ... Nature methods 17 (7), 665-680, 2020 | 565 | 2020 |
| RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... RNA 23 (5), 655-672, 2017 | 182 | 2017 |
| Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures K Kappel*, K Zhang*, Z Su*, AM Watkins, W Kladwang, S Li, G Pintilie, ... Nature Methods 17 (7), 699-707, 2020 | 141 | 2020 |
| Accelerated molecular dynamics simulations of ligand binding to a muscarinic G-protein-coupled receptor K Kappel, Y Miao, JA McCammon Quarterly reviews of biophysics 48 (4), 479-487, 2015 | 140 | 2015 |
| A unified mechanism for intron and exon definition and back-splicing X Li, S Liu, L Zhang, A Issaian, RC Hill, S Espinosa, S Shi, Y Cui, ... Nature 573 (7774), 375-380, 2019 | 139 | 2019 |
| Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 Å resolution K Zhang*, S Li*, K Kappel*, G Pintilie, Z Su, TC Mou, MF Schmid, R Das, ... Nature Communications 10 (1), 1-6, 2019 | 114 | 2019 |
| Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution Z Su*, K Zhang*, K Kappel*, S Li, MZ Palo, GD Pintilie, R Rangan, B Luo, ... Nature, 1-5, 2021 | 65 | 2021 |
| A quantitative and predictive model for RNA binding by human Pumilio proteins I Jarmoskaite, SK Denny, PP Vaidyanathan, WR Becker, JOL Andreasson, ... Molecular cell 74 (5), 966-981. e18, 2019 | 61 | 2019 |
| Architecture of an HIV-1 reverse transcriptase initiation complex KP Larsen, YK Mathiharan, K Kappel, AT Coey, DH Chen, D Barrero, ... Nature 557 (7703), 118-122, 2018 | 59 | 2018 |
| De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes K Kappel, S Liu, KP Larsen, G Skiniotis, EV Puglisi, JD Puglisi, ZH Zhou, ... Nature methods 15 (11), 947-954, 2018 | 55 | 2018 |
| Sampling native-like structures of RNA-protein complexes through Rosetta folding and docking K Kappel, R Das Structure 27 (1), 140-151. e5, 2019 | 45 | 2019 |
| The binding mechanism, multiple binding modes, and allosteric regulation of Staphylococcus aureus Sortase A probed by molecular dynamics simulations K Kappel, J Wereszczynski, RT Clubb, JA McCammon Protein science 21 (12), 1858-1871, 2012 | 45 | 2012 |
| Single-molecule FRET-Rosetta reveals RNA structural rearrangements during human telomerase catalysis JW Parks*, K Kappel*, R Das, MD Stone RNA 23 (2), 175-188, 2017 | 31 | 2017 |
| Blind tests of RNA nearest-neighbor energy prediction FC Chou, W Kladwang, K Kappel, R Das Proceedings of the National Academy of Sciences 113 (30), 8430-8435, 2016 | 31 | 2016 |
| RNA 3D structure prediction guided by independent folding of homologous sequences M Magnus, K Kappel, R Das, JM Bujnicki BMC bioinformatics 20, 1-15, 2019 | 29 | 2019 |
| Blind tests of RNA–protein binding affinity prediction K Kappel, I Jarmoskaite, PP Vaidyanathan, WJ Greenleaf, D Herschlag, ... Proceedings of the National Academy of Sciences 116 (17), 8336-8341, 2019 | 24 | 2019 |
| Structure of the OMEGA nickase IsrB in complex with ωRNA and target DNA S Hirano*, K Kappel*, H Altae-Tran, G Faure, ME Wilkinson, S Kannan, ... Nature, 1-7, 2022 | 15 | 2022 |
| Topological crossing in the misfolded Tetrahymena ribozyme resolved by cryo-EM S Li, MZ Palo, G Pintilie, X Zhang, Z Su, K Kappel, W Chiu, K Zhang, ... Proceedings of the National Academy of Sciences 119 (37), e2209146119, 2022 | 14 | 2022 |
| Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis X Liu, T Sun, A Shcherbina, Q Li, I Jarmoskaite, K Kappel, G Ramaswami, ... Nature Communications 12 (1), 2165, 2021 | 10 | 2021 |
