Stephen-John Sammut
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The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups
C Curtis, SP Shah, SF Chin, G Turashvili, OM Rueda, MJ Dunning, ...
Nature 486 (7403), 346-352, 2012
The Pfam protein families database
RD Finn, J Tate, J Mistry, PC Coggill, SJ Sammut, HR Hotz, G Ceric, ...
Nucleic acids research 36 (suppl_1), D281-D288, 2007
The somatic mutation profiles of 2,433 breast cancers refine their genomic and transcriptomic landscapes
B Pereira, SF Chin, OM Rueda, HKM Vollan, E Provenzano, HA Bardwell, ...
Nature communications 7 (1), 1-16, 2016
A biobank of breast cancer explants with preserved intra-tumor heterogeneity to screen anticancer compounds
A Bruna, OM Rueda, W Greenwood, AS Batra, M Callari, RN Batra, ...
Cell 167 (1), 260-274. e22, 2016
Transcriptional diversity during lineage commitment of human blood progenitors
L Chen, M Kostadima, JHA Martens, G Canu, SP Garcia, E Turro, ...
Science 345 (6204), 1251033, 2014
Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups
OM Rueda, SJ Sammut, JA Seoane, SF Chin, JL Caswell-Jin, M Callari, ...
Nature 567 (7748), 399-404, 2019
Multi-omic machine learning predictor of breast cancer therapy response
SJ Sammut, M Crispin-Ortuzar, SF Chin, E Provenzano, HA Bardwell, ...
Nature 601 (7894), 623-629, 2022
Personalized circulating tumor DNA analysis to detect residual disease after neoadjuvant therapy in breast cancer
BR McDonald, T Contente-Cuomo, SJ Sammut, A Odenheimer-Bergman, ...
Science translational medicine 11 (504), eaax7392, 2019
Residual cancer burden after neoadjuvant chemotherapy and long-term survival outcomes in breast cancer: a multicentre pooled analysis of 5161 patients
C Yau, M Osdoit, M van der Noordaa, S Shad, J Wei, D de Croze, ...
The Lancet Oncology 23 (1), 149-160, 2022
Integration of genomic, transcriptomic and proteomic data identifies two biologically distinct subtypes of invasive lobular breast cancer
M Michaut, SF Chin, I Majewski, TM Severson, T Bismeijer, L De Koning, ...
Scientific reports 6 (1), 1-13, 2016
Pfam 10 years on: 10 000 families and still growing
SJ Sammut, RD Finn, A Bateman
Briefings in bioinformatics 9 (3), 210-219, 2008
The genomic and immune landscapes of lethal metastatic breast cancer
L De Mattos-Arruda, SJ Sammut, EM Ross, R Bashford-Rogers, ...
Cell reports 27 (9), 2690-2708. e10, 2019
New model for estimating glomerular filtration rate in patients with cancer
T Janowitz, EH Williams, A Marshall, N Ainsworth, PB Thomas, ...
Journal of Clinical Oncology 35 (24), 2798-2805, 2017
Computational approach to discriminate human and mouse sequences in patient-derived tumour xenografts
M Callari, AS Batra, RN Batra, SJ Sammut, W Greenwood, H Clifford, ...
BMC genomics 19, 1-12, 2018
Intersect-then-combine approach: improving the performance of somatic variant calling in whole exome sequencing data using multiple aligners and callers
M Callari, SJ Sammut, L De Mattos-Arruda, A Bruna, OM Rueda, SF Chin, ...
Genome medicine 9, 1-11, 2017
The molecular landscape of Asian breast cancers reveals clinically relevant population-specific differences
JW Pan, MMA Zabidi, PS Ng, MY Meng, SN Hasan, B Sandey, ...
Nature communications 11 (1), 6433, 2020
Abstract P4-01-21: Multiplexed targeted digital sequencing of circulating tumor DNA to detect minimal residual disease in early and locally advanced breast cancer
BR McDonald, T Contente-Cuomo, SJ Sammut, B Ernst, ...
Cancer Research 79 (4_Supplement), P4-01-21-P4-01-21, 2019
A tumor DNA complex aberration index is an independent predictor of survival in breast and ovarian cancer
HKM Vollan, OM Rueda, SF Chin, C Curtis, G Turashvili, S Shah, ...
Molecular oncology 9 (1), 115-127, 2015
The somatic mutation profiles of 2,433 breast cancers refines their genomic and transcriptomic landscapes. Nat Commun. 2016; 7: 11479
B Pereira, SF Chin, OM Rueda, HK Vollan, E Provenzano, HA Bardwell, ...
DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation
RN Batra, A Lifshitz, AT Vidakovic, SF Chin, A Sati-Batra, SJ Sammut, ...
Nature communications 12 (1), 5406, 2021
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Articles 1–20