STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets D Szklarczyk, AL Gable, D Lyon, A Junge, S Wyder, J Huerta-Cepas, ... Nucleic acids research 47 (D1), D607-D613, 2019 | 14010 | 2019 |
Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475, 2018 | 801 | 2018 |
Bioconda: A sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... bioRxiv, 207092, 2017 | 801 | 2017 |
Transcriptome and Metabolite Changes during Hydrogen Cyanamide-Induced Floral Bud Break in Sweet Cherry IA Ionescu, G López-Ortega, M Burow, A Bayo-Canha, A Junge, ... Frontiers in plant science 8, 1233, 2017 | 86 | 2017 |
KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape N Alcaraz, J Pauling, R Batra, E Barbosa, A Junge, AGL Christensen, ... BMC Systems Biology 8 (1), 99, 2014 | 71 | 2014 |
RAIN: RNA–protein Association and Interaction Networks A Junge, JC Refsgaard, C Garde, X Pan, A Santos, F Alkan, C Anthon, ... Database 2017 (1), 2017 | 66 | 2017 |
Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration D Grissa, A Junge, TI Oprea, LJ Jensen Database 2022, baac019, 2022 | 36 | 2022 |
RNAscClust: clustering RNA sequences using structure conservation and graph based motifs M Miladi, A Junge, F Costa, SE Seemann, J Hull Havgaard, J Gorodkin, ... Bioinformatics, 2017 | 31 | 2017 |
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision A Junge, LJ Jensen Bioinformatics 36 (1), 264-271, 2020 | 26 | 2020 |
Highlights from the tenth ISCB Student Council Symposium 2014 F Rahman, K Wilkins, A Jacobsen, A Junge, E Vicedo, D DeBlasio, ... BMC Bioinformatics 16 (Suppl 2), A1, 2015 | 17 | 2015 |
On the hunt for the alternate host of Hemileia vastatrix A Koutouleas, H Jørgen Lyngs Jørgensen, B Jensen, JPB Lillesø, ... Ecology and evolution 9 (23), 13619-13631, 2019 | 15 | 2019 |
Automated Medical Coding on MIMIC-III and MIMIC-IV: A Critical Review and Replicability Study J Edin, A Junge, JD Havtorn, L Borgholt, M Maistro, T Ruotsalo, L Maaløe arXiv preprint arXiv:2304.10909, 2023 | 14 | 2023 |
Assessing the miRNA sponge potential of RUNX1T1 in t (8; 21) acute myeloid leukemia A Junge, R Zandi, JH Havgaard, J Gorodkin, JB Cowland Gene 615, 35-40, 2017 | 14 | 2017 |
Highlights from the 11th ISCB Student Council Symposium 2015 K Wilkins, M Hassan, M Francescatto, J Jespersen, RG Parra, B Cuypers, ... BMC Bioinformatics 17 (3), 203, 2016 | 5 | 2016 |
Bioconda: Sustainable and comprehensive software distribution for the life sciences R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... Nature Methods 15 (7), 475-476, 2018 | | 2018 |
Pig chromosome X long non-coding RNA annotation and expression S Djebali, O Palasca, C Anton, T Derrien, O Madsen, M Thomas, E Floden, ... PAG XXV-Plant and Animal Genome Conference, 2017 | | 2017 |
A Study of Pig Chromosome X lncRNA Expression S Djebali, O Palasca, C Anthon, T Derrien, O Madsen, M Thomas, ... The Plant and Animal Genome XXIIV Conference (PAG), 2017 | | 2017 |
Integration and visualization of non-coding RNA and protein interaction networks A Junge, JC Refsgaard, C Garde, X Pan, AS Delgado, C Anthon, F Alkan, ... First Annual Danish Bioinformatics Conference, 2015 | | 2015 |
RNAalignClust: Discovering ncRNA families by sequence-structure-based clustering of multiple sequence alignments M Miladi, A Junge Intergrative RNA Biology Special Interest Group Meeting, 22, 2014 | | 2014 |
KeyPathwayMiner-Combining OMICS data and biological networks J Pauling, N Alcaraz, A Junge, J Baumbach GCB 2012 Highlight Abstracts, 19, 2012 | | 2012 |