| Mutation-induced changes in the receptor-binding interface of the SARS-CoV-2 Delta variant B. 1.617. 2 and implications for immune evasion P Baral, N Bhattarai, ML Hossen, V Stebliankin, BS Gerstman, ... Biochemical and biophysical research communications 574, 14-19, 2021 | 80 | 2021 |
| Potential autoimmunity resulting from molecular mimicry between SARS-CoV-2 spike and human proteins J Nunez-Castilla, V Stebliankin, P Baral, CA Balbin, M Sobhan, ... Viruses 14 (7), 1415, 2022 | 61 | 2022 |
| Structural and dynamical differences in the spike protein RBD in the SARS-CoV-2 variants B. 1.1. 7 and B. 1.351 N Bhattarai, P Baral, BS Gerstman, PP Chapagain The Journal of Physical Chemistry B 125 (26), 7101-7107, 2021 | 36 | 2021 |
| Molecular mechanisms of pore formation and membrane disruption by the antimicrobial lantibiotic peptide Mutacin 1140 R Pokhrel, N Bhattarai, P Baral, BS Gerstman, JH Park, M Handfield, ... Physical Chemistry Chemical Physics 21 (23), 12530-12539, 2019 | 36 | 2019 |
| Significance of the RBD mutations in the SARS-CoV-2 omicron: from spike opening to antibody escape and cell attachment ML Hossen, P Baral, T Sharma, B Gerstman, P Chapagain Physical Chemistry Chemical Physics 24 (16), 9123-9129, 2022 | 24 | 2022 |
| In-silico identification of the vaccine candidate epitopes against the Lassa virus hemorrhagic fever P Baral, E Pavadai, BS Gerstman, PP Chapagain Scientific Reports 10 (1), 7667, 2020 | 17 | 2020 |
| Molecular Modeling and Simulation of the Peptidoglycan Layer of Gram-Positive Bacteria Staphylococcus aureus R Pokhrel, R Shakya, P Baral, P Chapagain Journal of Chemical Information and Modeling 62 (20), 4955-4962, 2022 | 14 | 2022 |
| Epitopedia: identifying molecular mimicry between pathogens and known immune epitopes CA Balbin, J Nunez-Castilla, V Stebliankin, P Baral, M Sobhan, ... ImmunoInformatics 9, 100023, 2023 | 11 | 2023 |
| Conformational Flexibility of the Protein–Protein Interfaces of the Ebola Virus VP40 Structural Matrix Filament E Pavadai, N Bhattarai, P Baral, RV Stahelin, PP Chapagain, ... The Journal of Physical Chemistry B 123 (43), 9045-9053, 2019 | 10 | 2019 |
| EMoMiS: A pipeline for epitope-based molecular mimicry search in protein structures with applications to SARS-CoV-2 V Stebliankin, P Baral, C Balbin, J Nunez-Castilla, M Sobhan, T Cickovski, ... BioRxiv, 2022.02. 05.479274, 2022 | 7 | 2022 |
| Lipid II binding and transmembrane properties of various antimicrobial lanthipeptides R Pokhrel, N Bhattarai, P Baral, BS Gerstman, JH Park, M Handfield, ... Journal of Chemical Theory and Computation 18 (1), 516-525, 2021 | 7 | 2021 |
| Structural insights into the repair mechanism of AGT for methyl-induced DNA damage RP Koirala, R Pokhrel, P Baral, PB Tiwari, PP Chapagain, NP Adhikari Biological Chemistry 402 (10), 1203-1211, 2021 | 6 | 2021 |
| Ebola virus protein VP40 binding to Sec24c for transport to the plasma membrane N Bhattarai, E Pavadai, R Pokhrel, P Baral, ML Hossen, RV Stahelin, ... Proteins: Structure, Function, and Bioinformatics 90 (2), 340-350, 2022 | 5 | 2022 |
| Evaluating protein binding interfaces with transformer networks V Stebliankin, A Shirali, P Baral, J Shi, P Chapagain, K Mathee, ... Nature Machine Intelligence 5 (9), 1042-1053, 2023 | 3 | 2023 |
| Spike mimicry of thrombopoietin may induce thrombocytopenia in COVID-19 J Nunez-Castilla, V Stebliankin, P Baral, CA Balbin, M Sobhan, ... BioRxiv, 2021.08. 10.455737, 2021 | 3 | 2021 |
| The oncogenic circular RNA circ_63706 is a potential therapeutic target in sonic hedgehog-subtype childhood medulloblastomas K Katsushima, R Pokhrel, I Mahmud, M Yuan, R Murad, P Baral, R Zhou, ... Acta Neuropathologica Communications 11 (1), 38, 2023 | 2 | 2023 |
| Immunoinformatic screening of Marburgvirus epitopes and computational investigations of epitope-allele complexes P Baral, E Pavadai, Z Zhou, Y Xu, CK Tison, R Pokhrel, BS Gerstman, ... International Immunopharmacology 111, 109109, 2022 | 1 | 2022 |
| Exploring temperature-dependent conformational changes in P38 MAP kinases involved in inflammation and acute lung injury P Baral, DJ Deredge, P Shapiro, J Hasday, AD MacKerell Biophysical Journal 123 (3), 138a, 2024 | | 2024 |
| PIsToN: Evaluating Protein Binding Interfaces with Transformer Networks V Stebliankin, A Shirali, P Baral, P Chapagain, G Narasimhan bioRxiv, 2023.01. 03.522623, 2023 | | 2023 |
| Optimization of polarizable drude nucleic acid force field using parameter reweighing via machine learning P Baral, M Sengul, A MacKerell ACS - Spring 2023, 2023 | | 2023 |
Prem ChapagainProfessor of Physics, Florida International Universityfiu.edu의 이메일 확인됨
