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Ugur Dogrusoz
Ugur Dogrusoz
Professor of Computer Engineering, Bilkent University, Ankara, Turkey
Verified email at cs.bilkent.edu.tr - Homepage
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Cited by
Cited by
Year
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data
E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...
Cancer discovery 2 (5), 401-404, 2012
14751*2012
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal
J Gao, BA Aksoy, U Dogrusoz, G Dresdner, B Gross, SO Sumer, Y Sun, ...
Science signaling 6 (269), pl1-pl1, 2013
137642013
Oncogenic signaling pathways in the cancer genome atlas
F Sanchez-Vega, M Mina, J Armenia, WK Chatila, A Luna, KC La, ...
Cell 173 (2), 321-337. e10, 2018
24912018
The systems biology graphical notation
NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
10512009
The BioPAX community standard for pathway data sharing
E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ...
Nature biotechnology 28 (9), 935-942, 2010
7892010
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov 2: 401–404
E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...
6872012
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2 (5): 401–404. doi: 10.1158/2159-8290
E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...
CD-12-0095.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 2012
4052012
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–4. doi: 10.1158/2159-8290
E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...
CD-12-0095, 2012
2872012
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data
I Rodchenkov, O Babur, A Luna, BA Aksoy, JV Wong, D Fong, M Franz, ...
Nucleic acids research 48 (D1), D489-D497, 2020
2702020
Patika: an integrated visual environment for collaborative construction and analysis of cellular pathways
E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ...
Bioinformatics 18 (7), 996-1003, 2002
2142002
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–4
E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...
1622023
A layout algorithm for undirected compound graphs
U Dogrusoz, E Giral, A Cetintas, A Civril, E Demir
Information Sciences 179 (7), 980-994, 2009
1352009
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discovery. 2012; 2: 401–404. doi: 10.1158/2159-8290
E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...
CD-12-0095.[Europe PMC free article][Abstract][CrossRef][Google Scholar], 0
109
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discovery. 2012; 2 (5): 401–404. doi: 10.1158/2159-8290
E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...
Nucleic acids research 47 (D1), D607-d13, 2019
1072019
Software support for SBGN maps: SBGN-ML and LibSBGN
MP Van Iersel, AC Villéger, T Czauderna, SE Boyd, FT Bergmann, A Luna, ...
Bioinformatics 28 (15), 2016-2021, 2012
1042012
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms
A Mazein, M Ostaszewski, I Kuperstein, S Watterson, N Le Novère, ...
NPJ systems biology and applications 4 (1), 21, 2018
932018
Analysis and visualization of longitudinal genomic and clinical data from the AACR project GENIE biopharma collaborative in cBioPortal
I de Bruijn, R Kundra, B Mastrogiacomo, TN Tran, L Sikina, T Mazor, X Li, ...
Cancer research 83 (23), 3861-3867, 2023
892023
An ontology for collaborative construction and analysis of cellular pathways
E Demir, O Babur, U Dogrusoz, A Gursoy, A Ayaz, G Gulesir, G Nisanci, ...
Bioinformatics 20 (3), 349-356, 2004
812004
Circular layout in the graph layout toolkit
U Doğrusöz, B Madden, P Madden
International Symposium on Graph Drawing, 92-100, 1996
811996
The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov. 2012; 2: 401–04
E Cerami, J Gao, U Dogrusoz, BE Gross, SO Sumer, BA Aksoy, ...
78
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