Anna Gerasimova,PhD
Anna Gerasimova,PhD
Staff Scientist, Bioinformatics and Computational Biology
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A method and server for predicting damaging missense mutations
IA Adzhubei, S Schmidt, L Peshkin, VE Ramensky, A Gerasimova, P Bork, ...
Nature methods 7 (4), 248-249, 2010
108302010
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks
KS Makarova, MV Omelchenko, EK Gaidamakova, VY Matrosova, ...
PloS one 2 (9), e955, 2007
2472007
Memory T Cells in Latent Mycobacterium tuberculosis Infection Are Directed against Three Antigenic Islands and Largely Contained in a CXCR3+ CCR6+ Th1 Subset
CSL Arlehamn, A Gerasimova, F Mele, R Henderson, J Swann, ...
PLoS Pathogens 9 (1), e1003130, 2013
1902013
Epigenomic analysis of primary human T cells reveals enhancers associated with TH 2 memory cell differentiation and asthma susceptibility
G Seumois, L Chavez, A Gerasimova, M Lienhard, N Omran, L Kalinke, ...
Nature immunology 15 (8), 777-788, 2014
1502014
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length
AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ...
Bioinformatics 21 (10), 2240-2245, 2005
1482005
Transcriptional profile of tuberculosis antigen–specific T cells reveals novel multifunctional features
CL Arlehamn, G Seumois, A Gerasimova, C Huang, Z Fu, X Yue, A Sette, ...
The Journal of Immunology 193 (6), 2931-2940, 2014
732014
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
DA Rodionov, PS Novichkov, ED Stavrovskaya, IA Rodionova, X Li, ...
BMC genomics 12 (1), 1-17, 2011
632011
Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae)
DA Ravcheev, AV Gerasimova, AA Mironov, MS Gelfand
BMC genomics 8 (1), 1-17, 2007
532007
Comparative genomics of the dormancy regulons in mycobacteria
A Gerasimova, AE Kazakov, AP Arkin, I Dubchak, MS Gelfand
Journal of bacteriology 193 (14), 3446-3452, 2011
472011
Hypermutable non-synonymous sites are under stronger negative selection
S Schmidt, A Gerasimova, FA Kondrashov, IA Adzuhbei, AS Kondrashov, ...
PLoS genetics 4 (11), e1000281, 2008
392008
Predicting cell types and genetic variations contributing to disease by combining GWAS and epigenetic data
A Gerasimova, L Chavez, B Li, G Seumois, J Greenbaum, A Rao, ...
PloS one 8 (1), e54359, 2013
382013
Evolution of the NadR regulon in Enterobacteriaceae
AV Gerasimova, MS Gelfand
Journal of bioinformatics and computational biology 3 (04), 1007-1019, 2005
242005
Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length and its validation on the ArcA binding sites
AV Favorov, MS Gelfand, AV Gerasimova, AA Mironov, VJ Makeev
Proc of BGRS 2004, 269-272, 2004
212004
Computer analysis of regulatory signals in bacterial genomes. Fnr binding segments
AV Gerasimova, DA Rodionov, AA Mironov, MS Gel'fand
Molekuliarnaia biologiia 35 (6), 1001-1009, 2001
112001
ArcA regulator of gamma-proteobacteria: identification of the binding signal and description of the regulon
AV Gerasimova, MS Gelfand, VY Makeev, AA Mironov, AV Favorov
Biophysics 48 (1), 21-25, 2003
82003
Identification of eight SARS-CoV-2 ORF7a deletion variants in 2,726 clinical specimens
SH Rosenthal, RM Kagan, A Gerasimova, B Anderson, D Grover, M Hua, ...
bioRxiv, 2020
42020
Development and validation of a 34-gene inherited cancer predisposition panel using next-generation sequencing
SH Rosenthal, W Sun, K Zhang, Y Liu, Q Nguyen, A Gerasimova, C Nery, ...
BioMed research international 2020, 2020
32020
Comparative genomics and evolution of bacterial regulatory systems
MS Gelfand, AV Gerasimova, EA Kotelnikova, ON Laikova, VY Makeev, ...
Bioinformatics of Genome Regulation and Structure II, 111-119, 2006
32006
Computer analysis of regulatory signals in bacterial genomes. Fnr binding sites
AV Gerasimova, DA Rodionov, AA Mironov, MS Gelfand
Molecular Biology 35 (6), 853-861, 2001
32001
Memory T-cells in latent Mycobacterium tuberculosis infection are directed against three antigenicis lands and largely contained in aCXCR3+ CCR6+ Th1subset//PLoSPathog.–2013 …
AC Lindestam, A Gerasimova, F Mele, R Henderson, J Swann, ...
22013
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