A map of human genome variation from population scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061, 2010 | 8747 | 2010 |
Mapping copy number variation by population-scale genome sequencing RE Mills, K Walter, C Stewart, RE Handsaker, K Chen, C Alkan, A Abyzov, ... Nature 470 (7332), 59-65, 2011 | 1274 | 2011 |
BamTools: a C++ API and toolkit for analyzing and managing BAM files DW Barnett, EK Garrison, AR Quinlan, MP Strömberg, GT Marth Bioinformatics 27 (12), 1691-1692, 2011 | 900 | 2011 |
Demographic history and rare allele sharing among human populations S Gravel, BM Henn, RN Gutenkunst, AR Indap, GT Marth, AG Clark, F Yu, ... Proceedings of the National Academy of Sciences 108 (29), 11983-11988, 2011 | 707 | 2011 |
Whole-genome sequencing and variant discovery in C. elegans LDW Hillier, GT Marth, AR Quinlan, D Dooling, G Fewell, D Barnett, P Fox, ... Nature methods 5 (2), 183-188, 2008 | 585 | 2008 |
Rapid whole-genome mutational profiling using next-generation sequencing technologies DR Smith, AR Quinlan, HE Peckham, K Makowsky, W Tao, B Woolf, ... Genome research 18 (10), 1638-1642, 2008 | 360 | 2008 |
Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms C Raczy, R Petrovski, CT Saunders, I Chorny, S Kruglyak, EH Margulies, ... Bioinformatics 29 (16), 2041-2043, 2013 | 353 | 2013 |
MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping WP Lee, MP Stromberg, A Ward, C Stewart, EP Garrison, GT Marth PloS one 9 (3), e90581, 2014 | 347 | 2014 |
Pyrobayes: an improved base caller for SNP discovery in pyrosequences AR Quinlan, DA Stewart, MP Strömberg, GT Marth Nature methods 5 (2), 179-181, 2008 | 335 | 2008 |
A comprehensive map of mobile element insertion polymorphisms in humans C Stewart, D Kural, MP Strömberg, JA Walker, MK Konkel, AM Stütz, ... PLoS genetics 7 (8), e1002236, 2011 | 325 | 2011 |
Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data T Dunn, G Berry, D Emig-Agius, Y Jiang, S Lei, A Iyer, N Udar, ... Bioinformatics 35 (9), 1579-1581, 2019 | 68 | 2019 |
Expression divergence measured by transcriptome sequencing of four yeast species MA Busby, JM Gray, AM Costa, C Stewart, MP Stromberg, D Barnett, ... BMC genomics 12, 1-15, 2011 | 33 | 2011 |
SNP discovery using advanced algorithms and neural networks P Unneberg, M Strömberg, F Sterky Bioinformatics 21 (10), 2528-2530, 2005 | 18 | 2005 |
Analysis of 70,000 EST sequences to study divergence between two closely related Populus species P Unneberg, M Strömberg, J Lundeberg, S Jansson, F Sterky Tree genetics & genomes 1, 109-115, 2005 | 15 | 2005 |
Image classification using the frequencies of simple features CS Lindsey, M Strömberg Pattern Recognition Letters 21 (3), 265-268, 2000 | 10 | 2000 |
Nirvana: clinical grade variant annotator M Stromberg, R Roy, J Lajugie, Y Jiang, H Li, E Margulies Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 7 | 2017 |
MOSAIK read alignment and assembly program M Strömberg, WP Lee | 7 | 2009 |
Pisces: An accurate and versatile single sample somatic and germline variant caller T Dunn, G Berry, D Emig-Agius, Y Jiang, A Iyer, N Udar, M Strömberg Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 2 | 2017 |
Enabling high-throughput sequencing data analysis with MOSAIK MP Stromberg Boston College, 2010 | 2 | 2010 |
MOSAIK: A hash-based algorithm for accurate next-generation sequencing read mapping WP Lee, M Stromberg, A Ward, C Stewart, E Garrison, GT Marth genetics 20, 2869-78, 0 | 1 | |