Efficient step size selection for the tau-leaping simulation method Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 124 (4), 2006 | 801 | 2006 |
The slow-scale stochastic simulation algorithm Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 122 (1), 2005 | 626 | 2005 |
Efficient formulation of the stochastic simulation algorithm for chemically reacting systems Y Cao, H Li, L Petzold The journal of chemical physics 121 (9), 4059-4067, 2004 | 568 | 2004 |
Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method M Rathinam, LR Petzold, Y Cao, DT Gillespie The Journal of Chemical Physics 119 (24), 12784-12794, 2003 | 565 | 2003 |
Adjoint sensitivity analysis for differential-algebraic equations: The adjoint DAE system and its numerical solution Y Cao, S Li, L Petzold, R Serban SIAM journal on scientific computing 24 (3), 1076-1089, 2003 | 534 | 2003 |
Epidemiological modeling of news and rumors on twitter F Jin, E Dougherty, P Saraf, Y Cao, N Ramakrishnan Proceedings of the 7th workshop on social network mining and analysis, 1-9, 2013 | 447 | 2013 |
Avoiding negative populations in explicit Poisson tau-leaping Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 123 (5), 2005 | 357 | 2005 |
Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems Y Cao, D Gillespie, L Petzold Journal of Computational Physics 206 (2), 395-411, 2005 | 345 | 2005 |
Adaptive explicit-implicit tau-leaping method with automatic tau selection Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 126 (22), 2007 | 254 | 2007 |
Sensitivity analysis of discrete stochastic systems R Gunawan, Y Cao, L Petzold, FJ Doyle Biophysical journal 88 (4), 2530-2540, 2005 | 226 | 2005 |
Misinformation propagation in the age of twitter F Jin, W Wang, L Zhao, E Dougherty, Y Cao, CT Lu, N Ramakrishnan Computer 47 (12), 90-94, 2014 | 218 | 2014 |
Algorithms and software for stochastic simulation of biochemical reacting systems H Li, Y Cao, LR Petzold, DT Gillespie Biotechnology progress 24 (1), 56-61, 2008 | 214 | 2008 |
Adjoint sensitivity analysis for differential-algebraic equations: algorithms and software Y Cao, S Li, L Petzold Journal of computational and applied mathematics 149 (1), 171-191, 2002 | 150 | 2002 |
Sensitivity analysis of differential-algebraic equations and partial differential equations L Petzold, S Li, Y Cao, R Serban Computers & chemical engineering 30 (10-12), 1553-1559, 2006 | 132 | 2006 |
Consistency and stability of tau-leaping schemes for chemical reaction systems M Rathinam, LR Petzold, Y Cao, DT Gillespie Multiscale Modeling & Simulation 4 (3), 867-895, 2005 | 132 | 2005 |
Accuracy limitations and the measurement of errors in the stochastic simulation of chemically reacting systems Y Cao, L Petzold Journal of Computational Physics 212 (1), 6-24, 2006 | 124 | 2006 |
Accelerated stochastic simulation of the stiff enzyme-substrate reaction Y Cao, DT Gillespie, LR Petzold The Journal of chemical physics 123 (14), 2005 | 106 | 2005 |
The numerical stability of leaping methods for stochastic simulation of chemically reacting systems Y Cao, LR Petzold, M Rathinam, DT Gillespie The Journal of chemical physics 121 (24), 12169-12178, 2004 | 98 | 2004 |
A posteriori error estimation and global error control for ordinary differential equations by the adjoint method Y Cao, L Petzold SIAM Journal on Scientific Computing 26 (2), 359-374, 2004 | 90 | 2004 |
Stochastic simulation of enzyme-catalyzed reactions with disparate timescales D Barik, MR Paul, WT Baumann, Y Cao, JJ Tyson Biophysical journal 95 (8), 3563-3574, 2008 | 66 | 2008 |