Endre Somogyi
Endre Somogyi
Lecturer of Computer Science, Indiana University
Verified email at - Homepage
Cited by
Cited by
libRoadRunner: a high performance SBML simulation and analysis library
ET Somogyi, JM Bouteiller, JA Glazier, M König, JK Medley, MH Swat, ...
Bioinformatics 31 (20), 3315-3321, 2015
Learning everywhere: Pervasive machine learning for effective high-performance computation
G Fox, JA Glazier, JCS Kadupitiya, V Jadhao, M Kim, J Qiu, JP Sluka, ...
2019 IEEE International Parallel and Distributed Processing Symposium …, 2019
A molecular dynamics study of loop fluctuation in human papillomavirus type 16 virus-like particles: a possible indicator of immunogenicity
H Joshi, S Cheluvaraja, E Somogyi, DR Brown, P Ortoleva
Vaccine 29 (51), 9423-9430, 2011
Learning Everywhere: Pervasive machine learning for effective High-Performance computation: Application background
G Fox, JA Glazier, JCS Kadupitiya, V Jadhao, M Kim, J Qiu, JP Sluka, ...
Technical report, Indiana University, 2019
ProtoMD: A prototyping toolkit for multiscale molecular dynamics
E Somogyi, A Abi Mansour, PJ Ortoleva
Computer Physics Communications 202, 337-350, 2016
libRoadRunner: a high performance SBML compliant simulator
ET Somogyi, MT Karlsson, M Swat, M Galdzicki, HM Sauro
bioRxiv, 001230, 2013
A modeling and simulation language for biological cells with coupled mechanical and chemical processes
E Somogyi, JA Glazier
Proceedings of the Symposium on Theory of Modeling & Simulation, 14:1--14:12, 2017
Maximizing predictability of a bottom-up complex multi-scale model through systematic validation and multi-objective multi-level optimization
JMC Bouteiller, Z Feng, A Onopa, M Huang, EY Hu, E Somogyi, M Baudry, ...
2015 7th International IEEE/EMBS Conference on Neural Engineering (NER), 300-303, 2015
A dynamic non-manifold mesh data structure to represent biological materials
E Somogyi
Journal of WSCG 26, 21, 2018
Formalizing knowledge in multi-scale agent-based simulations
E Somogyi, JP Sluka, JA Glazier
Proceedings of the ACM/IEEE 19th International Conference on Model Driven …, 2016
Towards a multi-scale agent-based programming language methodology
E Somogyi, A Hagar, JA Glazier
2016 Winter Simulation Conference (WSC), 1230-1240, 2016
Real-Time Interactive Modeling and Simulation in Biological Physics and Active Matter with Mechanica
ET Somogyi, J Coulter, F Sun, HM Sauro, JA Glazier
arXiv preprint arXiv:2105.02476, 2021
DMS: A Package for Multiscale Molecular Dynamics
E Somogyi, AA Mansour, PJ Ortoleva
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