Adam Siepel

Cited by

	All	Since 2017
Citations	34152	12414
h-index	61	45
i10-index	101	82

2500

1250

625

1875

2003200420052006200720082009201020112012201320142015201620172018201920202021202293 245 476 703 1398 1717 1618 1644 1872 2102 1993 2202 2186 2206 2154 2354 2397 2180 2417 906

Public access

View all

65 articles

0 articles

available

not available

Based on funding mandates

Co-authors

David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
Melissa HubiszCornell UniversityVerified email at cornell.edu
Charles G. DankoRobert N. Noyce Assistant Professor, Cornell UniversityVerified email at cornell.edu
Katherine S PollardDirector, Gladstone Institute of Data Science & Biotechnology / UCSFVerified email at gladstone.ucsf.edu
Ilan GronauHrezliya Interdisciplinary Center (IDC), Herzliya, IsraelVerified email at idc.ac.il
Kate RosenbloomUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Jakob Skou PedersenProfessor at Department of Molecular Medicine, Aarhus UniversityVerified email at ki.au.dk
john lisProfessor of Molecular Biology & Genetics, Cornell UniversityVerified email at cornell.edu
Brad GulkoPost doctoral researcher, Cold Spring Harbor LabVerified email at cshl.edu
W James KentUC Santa Cruz Genomics Institute, University of California Santa Cruz, UCSC Genome BrowserVerified email at soe.ucsc.edu
Webb MillerPenn State University, UC Santa Barbara, ArizonaVerified email at bx.psu.edu
W. Lee KrausUniversity of Texas Southwestern Medical CenterVerified email at utsouthwestern.edu
Sofie SalamaAdjunct Professor, Dept. Biomolecular Engineering, UC Santa Cruz Genomics Institute, HHMIVerified email at ucsc.edu
Leighton CoreUniversity of ConnecticutVerified email at uconn.edu
Tomas VinarComenius University in BratislavaVerified email at fmph.uniba.sk
Eric C. LaiMember, Sloan-Kettering InstituteVerified email at mskcc.org
Yifei (Yi-Fei) HuangPennsylvania State UniversityVerified email at psu.edu
Angie S. HinrichsUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at soe.ucsc.edu
Hiram ClawsonUC Santa Cruz Genomics Institute, UCSC Genome BrowserVerified email at ucsc.edu
Carlos D. BustamanteStanford UniversityVerified email at stanford.edu

Adam Siepel

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory

Verified email at cshl.edu - Homepage

genomics molecular evolution computational biology gene regulation population genetics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project ENCODE Project Consortium nature 447 (7146), 799, 2007	5628	2007
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, ... Genome research 15 (8), 1034-1050, 2005	4020	2005
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. International Chicken Genome Sequencing Consortium Nature 432 (7018), 695-716, 2004	2675	2004
Detection of nonneutral substitution rates on mammalian phylogenies KS Pollard, MJ Hubisz, KR Rosenbloom, A Siepel Genome research 20 (1), 110-121, 2010	2070	2010
Evolutionary and biomedical insights from the rhesus macaque genome RA Gibbs, J Rogers, MG Katze, R Bumgarner, GM Weinstock, ER Mardis, ... science 316 (5822), 222-234, 2007	1368	2007
A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011	1108	2011
The UCSC genome browser database: update 2006 AS Hinrichs, D Karolchik, R Baertsch, GP Barber, G Bejerano, H Clawson, ... Nucleic acids research 34 (suppl_1), D590-D598, 2006	1068	2006
An RNA gene expressed during cortical development evolved rapidly in humans KS Pollard, SR Salama, N Lambert, MA Lambot, S Coppens, JS Pedersen, ... Nature 443 (7108), 167-172, 2006	1046	2006
Comparative analyses of multi-species sequences from targeted genomic regions JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, ... Nature 424 (6950), 788-793, 2003	758	2003
Identification and classification of conserved RNA secondary structures in the human genome JS Pedersen, G Bejerano, A Siepel, K Rosenbloom, K Lindblad-Toh, ... PLoS computational biology 2 (4), e33, 2006	628	2006
Comparative and demographic analysis of orang-utan genomes DP Locke, LDW Hillier, WC Warren, KC Worley, LV Nazareth, DM Muzny, ... Nature 469 (7331), 529-533, 2011	624	2011
Genome sequencing highlights the dynamic early history of dogs AH Freedman, I Gronau, RM Schweizer, D Ortega-Del Vecchyo, E Han, ... PLoS genetics 10 (1), e1004016, 2014	571	2014
Patterns of positive selection in six mammalian genomes C Kosiol, T Vinař, RR da Fonseca, MJ Hubisz, CD Bustamante, R Nielsen, ... PLoS genetics 4 (8), e1000144, 2008	561	2008
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers LJ Core, AL Martins, CG Danko, CT Waters, A Siepel, JT Lis Nature genetics 46 (12), 1311-1320, 2014	549	2014
A distal enhancer and an ultraconserved exon are derived from a novel retroposon G Bejerano, CB Lowe, N Ahituv, B King, A Siepel, SR Salama, EM Rubin, ... Nature 441 (7089), 87-90, 2006	547	2006
Bayesian inference of ancient human demography from individual genome sequences I Gronau, MJ Hubisz, B Gulko, CG Danko, A Siepel Nature genetics 43 (10), 1031-1034, 2011	545	2011
Phylogenetic hidden Markov models A Siepel, D Haussler Statistical methods in molecular evolution, 325-351, 2005	512*	2005
Forces shaping the fastest evolving regions in the human genome KS Pollard, SR Salama, B King, AD Kern, T Dreszer, S Katzman, A Siepel, ... PLoS genetics 2 (10), e168, 2006	490	2006
A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells N Hah, CG Danko, L Core, JJ Waterfall, A Siepel, JT Lis, WL Kraus Cell 145 (4), 622-634, 2011	486	2011
A simple genetic architecture underlies morphological variation in dogs AR Boyko, P Quignon, L Li, JJ Schoenebeck, JD Degenhardt, ... PLoS biology 8 (8), e1000451, 2010	454	2010

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow this author

Cited by

Co-authors