Jeff Leek
Jeff Leek
Professor of Biostatistics, Johns Hopkins Bloomberg School of Public Health
Verified email at jhsph.edu - Homepage
Title
Cited by
Cited by
Year
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
JT Leek, WE Johnson, HS Parker, AE Jaffe, JD Storey
Bioinformatics 28 (6), 882-883, 2012
17892012
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg
Nature protocols 11 (9), 1650, 2016
15942016
Capturing heterogeneity in gene expression studies by surrogate variable analysis
JT Leek, JD Storey
PLoS Genet 3 (9), e161, 2007
14492007
Tackling the widespread and critical impact of batch effects in high-throughput data
JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ...
Nature Reviews Genetics 11 (10), 733-739, 2010
14172010
Significance analysis of time course microarray experiments
JD Storey, W Xiao, JT Leek, RG Tompkins, RW Davis
Proceedings of the National Academy of Sciences 102 (36), 12837-12842, 2005
6562005
Temporal dynamics and genetic control of transcription in the human prefrontal cortex
C Colantuoni, BK Lipska, T Ye, TM Hyde, R Tao, JT Leek, EA Colantuoni, ...
Nature 478 (7370), 519-523, 2011
6132011
Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies
AE Jaffe, P Murakami, H Lee, JT Leek, MD Fallin, AP Feinberg, RA Irizarry
International journal of epidemiology 41 (1), 200-209, 2012
4742012
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11 (8), R83, 2010
3742010
A general framework for multiple testing dependence
JT Leek, JD Storey
Proceedings of the National Academy of Sciences 105 (48), 18718-18723, 2008
3462008
Ballgown bridges the gap between transcriptome assembly and expression analysis
AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek
Nature biotechnology 33 (3), 243-246, 2015
3392015
On the design and analysis of gene expression studies in human populations
JM Akey, S Biswas, JT Leek, JD Storey
Nature genetics 39 (7), 807-808, 2007
2992007
EDGE: extraction and analysis of differential gene expression
JT Leek, E Monsen, AR Dabney, JD Storey
Bioinformatics 22 (4), 507-508, 2006
2942006
Systems-level dynamic analyses of fate change in murine embryonic stem cells
R Lu, F Markowetz, RD Unwin, JT Leek, EM Airoldi, BD MacArthur, ...
Nature 462 (7271), 358-362, 2009
2712009
sva: Surrogate variable analysis
JT Leek, WE Johnson, HS Parker, EJ Fertig, AE Jaffe, JD Storey, Y Zhang, ...
R package version 3 (0), 882-883, 2017
2062017
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
2012017
Sequencing technology does not eliminate biological variability
KD Hansen, Z Wu, RA Irizarry, JT Leek
Nature biotechnology 29 (7), 572-573, 2011
1752011
Statistics: P values are just the tip of the iceberg
JT Leek, RD Peng
Nature 520 (7549), 612-612, 2015
1702015
ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets
AC Frazee, B Langmead, JT Leek
BMC bioinformatics 12 (1), 449, 2011
1702011
The optimal discovery procedure for large-scale significance testing, with applications to comparative microarray experiments
JD Storey, JY Dai, JT Leek
Biostatistics 8 (2), 414-432, 2007
1702007
Opinion: Reproducible research can still be wrong: Adopting a prevention approach
JT Leek, RD Peng
Proceedings of the National Academy of Sciences 112 (6), 1645-1646, 2015
1652015
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