| Unique features of long non-coding RNA biogenesis and function JJ Quinn, HY Chang Nature reviews genetics 17 (1), 47-62, 2016 | 3342 | 2016 |
| Chromatin isolation by RNA purification (ChIRP) C Chu, J Quinn, HY Chang JoVE (Journal of Visualized Experiments), e3912, 2012 | 419 | 2012 |
| Molecular recording of mammalian embryogenesis MM Chan, ZD Smith, S Grosswendt, H Kretzmer, TM Norman, B Adamson, ... Nature 570 (7759), 77-82, 2019 | 298 | 2019 |
| Single-cell lineages reveal the rates, routes, and drivers of metastasis in cancer xenografts JJ Quinn, MG Jones, RA Okimoto, S Nanjo, MM Chan, N Yosef, ... Science 371 (6532), eabc1944, 2021 | 207 | 2021 |
| Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification JJ Quinn, IA Ilik, K Qu, P Georgiev, C Chu, A Akhtar, HY Chang Nature biotechnology 32 (9), 933-940, 2014 | 192 | 2014 |
| Rapid evolutionary turnover underlies conserved lncRNA–genome interactions JJ Quinn, QC Zhang, P Georgiev, IA Ilik, A Akhtar, HY Chang Genes & development 30 (2), 191-207, 2016 | 182 | 2016 |
| Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila IA Ilik, JJ Quinn, P Georgiev, F Tavares-Cadete, D Maticzka, S Toscano, ... Molecular cell 51 (2), 156-173, 2013 | 180 | 2013 |
| Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution D Yang, MG Jones, S Naranjo, WM Rideout, KHJ Min, R Ho, W Wu, ... Cell 185 (11), 1905-1923. e25, 2022 | 125 | 2022 |
| Inference of single-cell phylogenies from lineage tracing data using Cassiopeia MG Jones, A Khodaverdian, JJ Quinn, MM Chan, JA Hussmann, R Wang, ... Genome biology 21, 1-27, 2020 | 76 | 2020 |
| LncRNA-HIT Functions as an Epigenetic Regulator of Chondrogenesis through Its Recruitment of p100/CBP Complexes HL Carlson, JJ Quinn, YW Yang, CK Thornburg, HY Chang, HS Stadler PLoS genetics 11 (12), e1005680, 2015 | 71 | 2015 |
| In situ dissection of RNA functional subunits by domain-specific chromatin isolation by RNA purification (dChIRP) JJ Quinn, HY Chang Nuclear Bodies and Noncoding RNAs: Methods and Protocols, 199-213, 2015 | 17 | 2015 |
| Lineage recording reveals the phylodynamics, plasticity and paths of tumor evolution D Yang, MG Jones, S Naranjo, WM Rideout III, KH Min, R Ho, W Wu, ... bioRxiv, 2021.10. 12.464111, 2021 | 8 | 2021 |
| RNA switch at enhancers JJ Quinn, HY Chang Nature Genetics 46 (9), 929-931, 2014 | 5 | 2014 |
| Continuous lineage recording reveals rapid, multidirectional metastasis in a lung cancer xenograft model in mouse JJ Quinn, MG Jones, RA Okimoto, N Yosef, TG Bivona, JS Weissman bioRxiv, 2020 | 2 | 2020 |
| Inference of single-cell phylogenies from lineage tracing data MG Jones, A Khodaverdian, JJ Quinn, MM Chan, JA Hussmann, R Wang, ... bioRxiv, 800078, 2019 | 2 | 2019 |
| Decoding lncRNAs: Mapping the Structures, Functions, and Evolution of the roX Long Noncoding RNAs in Drosophila Dosage Compensation JJ Quinn Stanford University, 2016 | 1 | 2016 |
| Evolutionary dynamics of roX lncRNA function and genomic occupancy JJ Quinn, QC Zhang, P Georgiev, IA Ilik, A Akhtar, HY Chang bioRxiv, 026013, 2015 | | 2015 |
