|The joint graphical lasso for inverse covariance estimation across multiple classes|
P Danaher, P Wang, DM Witten
Journal of the Royal Statistical Society. Series B, Statistical methodology …, 2014
|Gene expression markers of tumor infiltrating leukocytes|
P Danaher, S Warren, L Dennis, L D’Amico, A White, ML Disis, MA Geller, ...
Journal for immunotherapy of cancer 5 (1), 1-15, 2017
|Pan-cancer adaptive immune resistance as defined by the Tumor Inflammation Signature (TIS): results from The Cancer Genome Atlas (TCGA)|
P Danaher, S Warren, R Lu, J Samayoa, A Sullivan, I Pekker, B Wallden, ...
Journal for immunotherapy of cancer 6 (1), 1-17, 2018
|Modeling bi-modality improves characterization of cell cycle on gene expression in single cells|
A McDavid, L Dennis, P Danaher, G Finak, M Krouse, A Wang, P Webster, ...
PLoS Comput Biol 10 (7), e1003696, 2014
|Multiplex digital spatial profiling of proteins and RNA in fixed tissue|
CR Merritt, GT Ong, SE Church, K Barker, P Danaher, G Geiss, M Hoang, ...
Nature biotechnology 38 (5), 586-599, 2020
|Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection|
N Desai, A Neyaz, A Szabolcs, AR Shih, JH Chen, V Thapar, LT Nieman, ...
Nature communications 11 (1), 1-15, 2020
|Engineering domain fusion chimeras from I-OnuI family LAGLIDADG homing endonucleases|
S Baxter, AR Lambert, R Kuhar, J Jarjour, N Kulshina, F Parmeggiani, ...
Nucleic acids research 40 (16), 7985-8000, 2012
|Facile semi-automated forensic body fluid identification by multiplex solution hybridization of NanoString® barcode probes to specific mRNA targets|
P Danaher, RL White, EK Hanson, J Ballantyne
Forensic Science International: Genetics 14, 18-30, 2015
|The Immune Microenvironment in Hormone Receptor–Positive Breast Cancer Before and After Preoperative Chemotherapy|
AG Waks, DG Stover, JL Guerriero, D Dillon, WT Barry, E Gjini, C Hartl, ...
Clinical Cancer Research 25 (15), 4644-4655, 2019
|Preoperative risk score for the prediction of mortality after repair of ruptured abdominal aortic aneurysms|
BT Garland, PJ Danaher, S Desikan, NT Tran, E Quiroga, N Singh, ...
Journal of vascular surgery 68 (4), 991-997, 2018
|Immune profiling of pre-and post-treatment breast cancer tissues from the SWOG S0800 neoadjuvant trial|
X Li, S Warren, V Pelekanou, V Wali, A Cesano, M Liu, P Danaher, ...
Journal for immunotherapy of cancer 7 (1), 1-9, 2019
|JGL: Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes|
R package version 2, 2013
|Development and analytical performance of a molecular diagnostic for anti-PD1 response on the nCounter Dx Analysis System.|
B Wallden, I Pekker, S Popa, N Dowidar, A Sullivan, T Hood, P Danaher, ...
Journal of Clinical Oncology 34 (15_suppl), 3034-3034, 2016
|Efficacy and safety of entinostat (ENT) and pembrolizumab (PEMBRO) in patients with melanoma progressing on or after a PD-1/L1 blocking antibody.|
SS Agarwala, SJ Moschos, ML Johnson, M Opyrchal, D Gabrilovich, ...
Journal of Clinical Oncology 36 (15_suppl), 9530-9530, 2018
|The incidence of ischemic colitis after repair of ruptured abdominal aortic aneurysms is decreasing in the endovascular era|
SK Desikan, N Singh, SR Steele, N Tran, E Quiroga, P Danaher, ...
Annals of vascular surgery 47, 247-252, 2018
|Immune gene expression profiling in children and adults with acute myeloid leukemia identifies distinct phenotypic patterns|
J Vadakekolathu, T Patel, S Reeder, H Schaarschmidt, M Schmitz, ...
Blood 130 (Supplement 1), 3942-3942, 2017
|Accuracy evaluations of three ruptured abdominal aortic aneurysm mortality risk scores using an independent dataset|
SK Hansen, PJ Danaher, BW Starnes, HW Hollis Jr, BT Garland
Journal of vascular surgery 70 (1), 67-73, 2019
|Flt3 ligand augments immune responses to anti-DEC-205-NY-ESO-1 vaccine through expansion of dendritic cell subsets|
N Bhardwaj, PA Friedlander, AC Pavlick, MS Ernstoff, BR Gastman, ...
Nature Cancer 1 (12), 1204-1217, 2020
|A gene expression assay for simultaneous measurement of microsatellite instability and anti-tumor immune activity|
P Danaher, S Warren, SF Ong, N Elliott, A Cesano, S Ferree
Journal for immunotherapy of cancer 7 (1), 1-12, 2019
|Capturing the complexity of the immune microenvironment of acute myeloid leukemia with 3D biology technology.|
S Rutella, J Vadakekolathu, H Altmann, T Patel, S Reeder, Y Liang, ...
Journal of Clinical Oncology 36 (5_suppl), 50-50, 2018