Patrick Danaher
Patrick Danaher
Principal Biostatistician, NanoString Technologies
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The joint graphical lasso for inverse covariance estimation across multiple classes
P Danaher, P Wang, DM Witten
Journal of the Royal Statistical Society. Series B, Statistical methodology …, 2014
Gene expression markers of tumor infiltrating leukocytes
P Danaher, S Warren, L Dennis, L D’Amico, A White, ML Disis, MA Geller, ...
Journal for immunotherapy of cancer 5 (1), 1-15, 2017
Pan-cancer adaptive immune resistance as defined by the Tumor Inflammation Signature (TIS): results from The Cancer Genome Atlas (TCGA)
P Danaher, S Warren, R Lu, J Samayoa, A Sullivan, I Pekker, B Wallden, ...
Journal for immunotherapy of cancer 6 (1), 1-17, 2018
Modeling bi-modality improves characterization of cell cycle on gene expression in single cells
A McDavid, L Dennis, P Danaher, G Finak, M Krouse, A Wang, P Webster, ...
PLoS Comput Biol 10 (7), e1003696, 2014
Multiplex digital spatial profiling of proteins and RNA in fixed tissue
CR Merritt, GT Ong, SE Church, K Barker, P Danaher, G Geiss, M Hoang, ...
Nature biotechnology 38 (5), 586-599, 2020
Temporal and spatial heterogeneity of host response to SARS-CoV-2 pulmonary infection
N Desai, A Neyaz, A Szabolcs, AR Shih, JH Chen, V Thapar, LT Nieman, ...
Nature communications 11 (1), 1-15, 2020
Engineering domain fusion chimeras from I-OnuI family LAGLIDADG homing endonucleases
S Baxter, AR Lambert, R Kuhar, J Jarjour, N Kulshina, F Parmeggiani, ...
Nucleic acids research 40 (16), 7985-8000, 2012
Facile semi-automated forensic body fluid identification by multiplex solution hybridization of NanoString® barcode probes to specific mRNA targets
P Danaher, RL White, EK Hanson, J Ballantyne
Forensic Science International: Genetics 14, 18-30, 2015
The Immune Microenvironment in Hormone Receptor–Positive Breast Cancer Before and After Preoperative Chemotherapy
AG Waks, DG Stover, JL Guerriero, D Dillon, WT Barry, E Gjini, C Hartl, ...
Clinical Cancer Research 25 (15), 4644-4655, 2019
Preoperative risk score for the prediction of mortality after repair of ruptured abdominal aortic aneurysms
BT Garland, PJ Danaher, S Desikan, NT Tran, E Quiroga, N Singh, ...
Journal of vascular surgery 68 (4), 991-997, 2018
Immune profiling of pre-and post-treatment breast cancer tissues from the SWOG S0800 neoadjuvant trial
X Li, S Warren, V Pelekanou, V Wali, A Cesano, M Liu, P Danaher, ...
Journal for immunotherapy of cancer 7 (1), 1-9, 2019
JGL: Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
P Danaher
R package version 2, 2013
Development and analytical performance of a molecular diagnostic for anti-PD1 response on the nCounter Dx Analysis System.
B Wallden, I Pekker, S Popa, N Dowidar, A Sullivan, T Hood, P Danaher, ...
Journal of Clinical Oncology 34 (15_suppl), 3034-3034, 2016
Efficacy and safety of entinostat (ENT) and pembrolizumab (PEMBRO) in patients with melanoma progressing on or after a PD-1/L1 blocking antibody.
SS Agarwala, SJ Moschos, ML Johnson, M Opyrchal, D Gabrilovich, ...
Journal of Clinical Oncology 36 (15_suppl), 9530-9530, 2018
The incidence of ischemic colitis after repair of ruptured abdominal aortic aneurysms is decreasing in the endovascular era
SK Desikan, N Singh, SR Steele, N Tran, E Quiroga, P Danaher, ...
Annals of vascular surgery 47, 247-252, 2018
Immune gene expression profiling in children and adults with acute myeloid leukemia identifies distinct phenotypic patterns
J Vadakekolathu, T Patel, S Reeder, H Schaarschmidt, M Schmitz, ...
Blood 130 (Supplement 1), 3942-3942, 2017
Accuracy evaluations of three ruptured abdominal aortic aneurysm mortality risk scores using an independent dataset
SK Hansen, PJ Danaher, BW Starnes, HW Hollis Jr, BT Garland
Journal of vascular surgery 70 (1), 67-73, 2019
Flt3 ligand augments immune responses to anti-DEC-205-NY-ESO-1 vaccine through expansion of dendritic cell subsets
N Bhardwaj, PA Friedlander, AC Pavlick, MS Ernstoff, BR Gastman, ...
Nature Cancer 1 (12), 1204-1217, 2020
A gene expression assay for simultaneous measurement of microsatellite instability and anti-tumor immune activity
P Danaher, S Warren, SF Ong, N Elliott, A Cesano, S Ferree
Journal for immunotherapy of cancer 7 (1), 1-12, 2019
Capturing the complexity of the immune microenvironment of acute myeloid leukemia with 3D biology technology.
S Rutella, J Vadakekolathu, H Altmann, T Patel, S Reeder, Y Liang, ...
Journal of Clinical Oncology 36 (5_suppl), 50-50, 2018
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