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Shuzhe Wang
Shuzhe Wang
Isomorphic Labs
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Improving conformer generation for small rings and macrocycles based on distance geometry and experimental torsional-angle preferences
S Wang, J Witek, GA Landrum, S Riniker
Journal of chemical information and modeling 60 (4), 2044-2058, 2020
1202020
Rationalization of the membrane permeability differences in a series of analogue cyclic decapeptides
J Witek, S Wang, B Schroeder, R Lingwood, A Dounas, HJ Roth, ...
Journal of chemical information and modeling 59 (1), 294-308, 2018
612018
Combining machine learning and molecular dynamics to predict P-glycoprotein substrates
C Esposito, S Wang, UEW Lange, F Oellien, S Riniker
Journal of Chemical Information and Modeling 60 (10), 4730-4749, 2020
322020
Effect of flexibility, lipophilicity, and the location of polar residues on the passive membrane permeability of a series of cyclic decapeptides
S Wang, G Konig, HJ Roth, M Fouché, S Rodde, S Riniker
Journal of medicinal chemistry 64 (17), 12761-12773, 2021
282021
Use of molecular dynamics fingerprints (MDFPs) in SAMPL6 octanol–water log P blind challenge
S Wang, S Riniker
Journal of computer-aided molecular design 34 (4), 393-403, 2020
232020
Evaluation of nine condensed-phase force fields of the GROMOS, CHARMM, OPLS, AMBER, and OpenFF families against experimental cross-solvation free energies
S Kashefolgheta, S Wang, WE Acree, PH Hünenberger
Physical Chemistry Chemical Physics 23 (23), 13055-13074, 2021
122021
Incorporating NOE-derived distances in conformer generation of cyclic peptides with distance geometry
S Wang, K Krummenacher, GA Landrum, BD Sellers, P Di Lello, ...
Journal of Chemical Information and Modeling 62 (3), 472-485, 2022
102022
Volume-scaled common nearest neighbor clustering algorithm with free-energy hierarchy
RG Weiß, B Ries, S Wang, S Riniker
The Journal of Chemical Physics 154 (8), 2021
92021
Machine learning with and for molecular dynamics simulations
S Riniker, S Wang, P Bleiziffer, L Böselt, C Esposito
Chimia 73 (12), 1024-1024, 2019
62019
Machine learning in the area of molecular dynamics simulations
S Wang, S Riniker
52020
Passing the barrier–How computer simulations can help to understand and improve the passive membrane permeability of cyclic peptides
SM Linker, S Wang, B Ries, T Stadelman, S Riniker
Chimia 75 (6), 518-521, 2021
42021
Conformation of Macrocycles and Learning from Molecular Dynamics Data
S Wang
ETH Zurich, 2021
2021
Volume-Scaled Common Nearest Neighbor Clustering Algorithm with Free-Energy Hierarchy
R Gregor Weiß, B Ries, S Wang, S Riniker
arXiv e-prints, arXiv: 2009.08757, 2020
2020
Simulation Studies on the Lipid Interaction and Conformation of Novel Drug-Delivery Pseudopeptidic Polymers
S Wang, F Bresme
The Journal of Physical Chemistry B 121 (39), 9113-9125, 2017
2017
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