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Trung Nghia Vu
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A primer to frequent itemset mining for bioinformatics
S Naulaerts, P Meysman, W Bittremieux, TN Vu, W Vanden Berghe, ...
Briefings in bioinformatics 16 (2), 216-231, 2015
1692015
Beta-Poisson model for single-cell RNA-seq data analyses
TN Vu, QF Wills, KR Kalari, N Niu, L Wang, M Rantalainen, Y Pawitan
Bioinformatics 32 (14), 2128-2135, 2016
1572016
Getting your peaks in line: a review of alignment methods for NMR spectral data
TN Vu, K Laukens
Metabolites 3 (2), 259-276, 2013
1302013
1H NMR based metabolomics of CSF and blood serum: A metabolic profile for a transgenic rat model of Huntington disease
KA Verwaest, TN Vu, K Laukens, LE Clemens, HP Nguyen, B Van Gasse, ...
Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1812 (11 ¡¦, 2011
1002011
An integrated workflow for robust alignment and simplified quantitative analysis of NMR spectrometry data
TN Vu, D Valkenborg, K Smets, KA Verwaest, R Dommisse, F Lemiere, ...
BMC bioinformatics 12, 1-14, 2011
862011
Reproducibility of methods to detect differentially expressed genes from single-cell RNA sequencing
T Mou, W Deng, F Gu, Y Pawitan, TN Vu
Frontiers in genetics 10, 486248, 2020
652020
The role of monocytes in the development of Tuberculosis-associated Immune Reconstitution Inflammatory Syndrome
HTT Tran, R Van den Bergh, TN Vu, K Laukens, W Worodria, MM Loembé, ...
Immunobiology 219 (1), 37-44, 2014
652014
speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification
C Beirnaert, P Meysman, TN Vu, N Hermans, S Apers, L Pieters, A Covaci, ...
PLoS Computational Biology 14 (3), e1006018, 2018
482018
1H-NMR study of the metabolome of a moderately hypoxia-tolerant fish, the common carp (Cyprinus carpio)
I Lardon, M Eyckmans, TN Vu, K Laukens, G De Boeck, R Dommisse
Metabolomics 9, 1216-1227, 2013
412013
Cell-level somatic mutation detection from single-cell RNA sequencing
TN Vu, HN Nguyen, S Calza, KR Kalari, L Wang, Y Pawitan
Bioinformatics 35 (22), 4679-4687, 2019
382019
A fast detection of fusion genes from paired-end RNA-seq data
TN Vu, W Deng, QT Trac, S Calza, W Hwang, Y Pawitan
BMC genomics 19, 1-13, 2018
352018
T cell responses at diagnosis of amyotrophic lateral sclerosis predict disease progression
S Yazdani, C Seitz, C Cui, A Lovik, L Pan, F Piehl, Y Pawitan, U Kläppe, ...
Nature communications 13 (1), 6733, 2022
322022
1H-NMR study of the metabolome of an exceptionally anoxia tolerant vertebrate, the crucian carp (Carassius carassius)
I Lardon, GE Nilsson, JAW Stecyk, TN Vu, K Laukens, R Dommisse, ...
Metabolomics 9, 311-323, 2013
302013
Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients
C Suo, W Deng, TN Vu, M Li, L Shi, Y Pawitan
Biology direct 13, 1-11, 2018
282018
Comprehensive landscape of subtype-specific coding and non-coding RNA transcripts in breast cancer
TN Vu, S Pramana, S Calza, C Suo, D Lee, Y Pawitan
Oncotarget 7 (42), 68851, 2016
222016
Isoform-level gene expression patterns in single-cell RNA-sequencing data
TN Vu, QF Wills, KR Kalari, N Niu, L Wang, Y Pawitan, M Rantalainen
Bioinformatics 34 (14), 2392-2400, 2018
142018
Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data
W Deng, T Mou, KR Kalari, N Niu, L Wang, Y Pawitan, TN Vu
Bioinformatics 36 (3), 805-812, 2020
132020
The radiosensitising effect of gemcitabine and its main metabolite dFdU under low oxygen conditions is in vitro not dependent on functional HIF-1 protein
A Wouters, B Pauwels, N Burrows, M Baay, V Deschoolmeester, TN Vu, ...
BMC cancer 14, 1-11, 2014
112014
Circall: fast and accurate methodology for discovery of circular RNAs from paired-end RNA-sequencing data
DT Nguyen, QT Trac, TH Nguyen, HN Nguyen, N Ohad, Y Pawitan, TN Vu
BMC bioinformatics 22, 1-18, 2021
102021
Isoform-level quantification for single-cell RNA sequencing
L Pan, HQ Dinh, Y Pawitan, TN Vu
Bioinformatics 38 (5), 1287-1294, 2022
92022
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