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Christopher Henry
Christopher Henry
Computational Biologist, Argonne National Laboratory
Verified email at mcs.anl.gov
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Cited by
Cited by
Year
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ...
Molecular systems biology 3 (1), 121, 2007
17282007
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
14652017
High-throughput generation, optimization and analysis of genome-scale metabolic models
CS Henry, M DeJongh, AA Best, PM Frybarger, B Linsay, RL Stevens
Nature biotechnology 28 (9), 977-982, 2010
11662010
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
10812018
Thermodynamics-based metabolic flux analysis
CS Henry, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 92 (5), 1792-1805, 2007
7222007
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
5542021
Competitive and cooperative metabolic interactions in bacterial communities
S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ...
Nature communications 2 (1), 589, 2011
5132011
Group contribution method for thermodynamic analysis of complex metabolic networks
MD Jankowski, CS Henry, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 95 (3), 1487-1499, 2008
4862008
Exploring the diversity of complex metabolic networks
V Hatzimanikatis, C Li, JA Ionita, CS Henry, MD Jankowski, LJ Broadbelt
Bioinformatics 21 (8), 1603-1609, 2005
4232005
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
3282020
Genome-scale thermodynamic analysis of Escherichia coli metabolism
CS Henry, MD Jankowski, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 90 (4), 1453-1461, 2006
2822006
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ...
PloS one 7 (10), e48053, 2012
2202012
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics
JG Jeffryes, RL Colastani, M Elbadawi-Sidhu, T Kind, TD Niehaus, ...
Journal of cheminformatics 7, 1-8, 2015
2182015
iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations
CS Henry, JF Zinner, MP Cohoon, RL Stevens
Genome Biol 10 (6), R69, 2009
2032009
Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3‐hydroxypropanoate
CS Henry, LJ Broadbelt, V Hatzimanikatis
Biotechnology and bioengineering 106 (3), 462-473, 2010
1902010
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED
S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry
Systems metabolic engineering: methods and protocols, 17-45, 2013
1652013
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
Nucleic acids research 49 (D1), D575-D588, 2021
1562021
Metabolic reconstruction and modeling microbial electrosynthesis
CW Marshall, DE Ross, KM Handley, PB Weisenhorn, JN Edirisinghe, ...
Scientific reports 7 (1), 8391, 2017
1192017
Microbial community metabolic modeling: a community data‐driven network reconstruction
CS Henry, HC Bernstein, P Weisenhorn, RC Taylor, JY Lee, J Zucker, ...
Journal of cellular physiology 231 (11), 2339-2345, 2016
1102016
Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model
K Tanaka, CS Henry, JF Zinner, E Jolivet, MP Cohoon, F Xia, V Bidnenko, ...
Nucleic acids research 41 (1), 687-699, 2013
1092013
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