TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions H Han, JW Cho, S Lee, A Yun, H Kim, D Bae, S Yang, CY Kim, M Lee, ... Nucleic acids research 46 (D1), D380-D386, 2018 | 1577 | 2018 |
Impact of mutations in DNA methylation modification genes on genome-wide methylation landscapes and downstream gene activations in pan-cancer CJ Lee, H Ahn, D Jeong, M Pak, JH Moon, S Kim BMC medical genomics 13, 1-14, 2020 | 34 | 2020 |
DRIM: a web-based system for investigating drug response at the molecular level by condition-specific multi-omics data integration M Oh, S Park, S Lee, D Lee, S Lim, D Jeong, K Jo, I Jung, S Kim Frontiers in Genetics 11, 564792, 2020 | 17 | 2020 |
Propanet: Time-varying condition-specific transcriptional network construction by network propagation H Ahn, K Jo, D Jeong, M Pak, J Hur, W Jung, S Kim Frontiers in plant science 10, 698, 2019 | 12 | 2019 |
Network propagation for the analysis of multi-omics data M Pak, D Jeong, JH Moon, H Ann, B Hur, S Lee, S Kim Recent Advances in Biological Network Analysis: Comparative Network Analysis …, 2021 | 10 | 2021 |
GOAT: Gene-level biomarker discovery from multi-Omics data using graph ATtention neural network for eosinophilic asthma subtype D Jeong, B Koo, M Oh, TB Kim, S Kim Bioinformatics 39 (10), btad582, 2023 | 6 | 2023 |
Machine learning-based proteomics reveals ferroptosis in COPD patient-derived airway epithelial cells upon smoking exposure JK Yoon, S Park, KH Lee, D Jeong, J Woo, J Park, SM Yi, D Han, CG Yoo, ... Journal of Korean Medical Science 38 (29), 2023 | 4 | 2023 |
A survey on computational methods for investigation on ncRNA-disease association through the mode of action perspective D Bang, J Gu, J Park, D Jeong, B Koo, J Yi, J Shin, I Jung, S Kim, S Lee International Journal of Molecular Sciences 23 (19), 11498, 2022 | 4 | 2022 |
Construction of condition-specific gene regulatory network using kernel canonical correlation analysis D Jeong, S Lim, S Lee, M Oh, C Cho, H Seong, W Jung, S Kim Frontiers in Genetics 12, 652623, 2021 | 2 | 2021 |
Characterization of radiation-resistance mechanism in Spirosoma montaniterrae DY10T in terms of transcriptional regulatory system C Cho, D Lee, D Jeong, S Kim, MK Kim, S Srinivasan Scientific Reports 13 (1), 4739, 2023 | 1 | 2023 |
Identification of VWA5A as a novel biomarker for inhibiting metastasis in breast cancer by machine-learning based protein prioritization J Koh, D Jeong, SY Park, D Han, DS Kim, HY Kim, H Kim, S Yang, S Kim, ... Scientific Reports 14 (1), 2459, 2024 | | 2024 |
Deep learning-based survival prediction using DNA methylation-derived 3D genomic information J Yang, D Lee, B Koo, D Jeong, S Kim Proceedings of the 14th ACM International Conference on Bioinformatics …, 2023 | | 2023 |
Novel biomarkers of metastasis-prone breast cancer revealed by high-throughput proteomics assay J Koh, D Jeong, D Han, S Yang, S Kim, HS Ryu Cancer Research 83 (7_Supplement), 2467-2467, 2023 | | 2023 |