| Comparing three notions of discrete ricci curvature on biological networks M Pouryahya, J Mathews, A Tannenbaum arXiv preprint arXiv:1712.02943, 2017 | 35 | 2017 |
| Robust and interpretable PAM50 reclassification exhibits survival advantage for myoepithelial and immune phenotypes JC Mathews, S Nadeem, AJ Levine, M Pouryahya, JO Deasy, ... NPJ Breast Cancer 5 (1), 30, 2019 | 30 | 2019 |
| Characterizing cancer drug response and biological correlates: a geometric network approach M Pouryahya, JH Oh, JC Mathews, JO Deasy, AR Tannenbaum Scientific reports 8 (1), 6402, 2018 | 27 | 2018 |
| Functional network analysis reveals an immune tolerance mechanism in cancer JC Mathews, S Nadeem, M Pouryahya, Z Belkhatir, JO Deasy, AJ Levine, ... Proceedings of the National Academy of Sciences 117 (28), 16339-16345, 2020 | 22 | 2020 |
| A guide to the BRAIN Initiative Cell Census Network data ecosystem M Hawrylycz, ME Martone, GA Ascoli, JG Bjaalie, HW Dong, SS Ghosh, ... PLoS biology 21 (6), e3002133, 2023 | 18 | 2023 |
| aWCluster: A novel integrative network-based clustering of multiomics for subtype analysis of cancer data M Pouryahya, JH Oh, P Javanmard, JC Mathews, Z Belkhatir, JO Deasy, ... IEEE/ACM transactions on computational biology and bioinformatics 19 (3 …, 2020 | 16 | 2020 |
| Pan-cancer prediction of cell-line drug sensitivity using network-based methods M Pouryahya, JH Oh, JC Mathews, Z Belkhatir, C Moosmüller, JO Deasy, ... International Journal of Molecular Sciences 23 (3), 1074, 2022 | 8 | 2022 |
| Molecular phenotyping using networks, diffusion, and topology: soft tissue sarcoma JC Mathews, M Pouryahya, C Moosmüller, YG Kevrekidis, JO Deasy, ... Scientific reports 9 (1), 13982, 2019 | 8 | 2019 |
| Tumor Immune Microenvironment and Response to Neoadjuvant Chemotherapy in Hormone Receptor/HER2+ Early Stage Breast Cancer RS Vanguri, KM Fenn, MR Kearney, Q Wang, H Guo, DK Marks, C Chin, ... Clinical breast cancer 22 (6), 538-546, 2022 | 7 | 2022 |
| Multi-focal tensors as invariant differential forms J Mathews arXiv preprint arXiv:1610.04294, 2016 | 5 | 2016 |
| Fingerprints of cancer by persistent homology A Carpio, LL Bonilla, JC Mathews, AR Tannenbaum bioRxiv, 777169, 2019 | 4 | 2019 |
| Stochastic Norton–Simon–Massagué Tumor Growth Modeling: Controlled and Mixed-Effect Uncontrolled Analysis Z Belkhatir, M Pavon, JC Mathews, M Pouryahya, JO Deasy, L Norton, ... IEEE Transactions on Control Systems Technology 29 (2), 704-717, 2020 | 3 | 2020 |
| A Novel Integrative Multiomics Method Reveals a Hypoxia-Related Subgroup of Breast Cancer with Significantly Decreased Survival M Pouryahya, JH Oh, P Javanmard, JC Mathews, Z Belkhatir, JO Deasy, ... bioRxiv, 558700, 2019 | 3 | 2019 |
| Integration of peripheral blood‐and tissue‐based biomarkers of response to immune checkpoint blockade in urothelial carcinoma RS Vanguri, JW Smithy, Y Li, M Zhuang, CA Maher, N Aleynick, X Peng, ... The Journal of Pathology 261 (3), 349-360, 2023 | 2 | 2023 |
| An exact test for significance of clusters in binary data J Mathews, C Crowe, R Vanguri, M Callahan, T Hollmann, S Nadeem arXiv preprint arXiv:2109.13876, 2021 | 2 | 2021 |
| Optimal mass transport for robust texture analysis Z Belkhatir, A Iyer, JC Mathews, M Pouryahya, S Nadeem, JO Deasy, ... bioRxiv, 855221, 2019 | 2 | 2019 |
| Methods for de-cloaking cancer from the immune system through downregulation of cancer-produced pregnancy specific glycoprotein JC Mathews, S Nadeem, M Pouryahya, Z Belkhatir, JO Deasy, ... US Patent App. 17/998,634, 2023 | | 2023 |
| Vis-SPLIT: Interactive Hierarchical Modeling for mRNA Expression Classification B Roper, JC Mathews, S Nadeem, JH Park arXiv preprint arXiv:2309.04423, 2023 | | 2023 |
| A guide to the BRAIN Initiative Cell Census Network data ecosystem M Hawrylycz, ME Martone, GA Ascoli, JG Bjaalie, HW Dong, SS Ghosh, ... PLoS biology 21 (6), e3002133, 2023 | | 2023 |
| A guide to the BRAIN Initiative Cell Census Network data ecosystem. G Ascoli, J Bjaalie, HW Dong, S Ghosh, J Gillis, R Hertzano, D Haynor, ... PLoS Biology 21 (6), 2023 | | 2023 |
Allen TannenbaumDistinguished Professor, Computer Science/Applied Mathematics, Stony Brook UniversityVerified email at stonybrook.edu
