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Michele Ceccarelli
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TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
A Colaprico, TC Silva, C Olsen, L Garofano, C Cava, D Garolini, ...
Nucleic acids research 44 (8), e71-e71, 2016
16022016
Molecular profiling reveals biologically discrete subsets and pathways of progression in diffuse glioma
M Ceccarelli, FP Barthel, TM Malta, TS Sabedot, SR Salama, BA Murray, ...
Cell 164 (3), 550-563, 2016
15132016
Transforming fusions of FGFR and TACC genes in human glioblastoma
D Singh, JM Chan, P Zoppoli, F Niola, R Sullivan, A Castano, EM Liu, ...
Science 337 (6099), 1231-1235, 2012
6882012
RNA-Seq signatures normalized by mRNA abundance allow absolute deconvolution of human immune cell types
G Monaco, B Lee, W Xu, S Mustafah, YY Hwang, C Carre, N Burdin, ...
Cell reports 26 (6), 1627-1640. e7, 2019
3252019
TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach
P Zoppoli, S Morganella, M Ceccarelli
BMC bioinformatics 11 (1), 1-15, 2010
2852010
Evolution of metastases in space and time under immune selection
M Angelova, B Mlecnik, A Vasaturo, G Bindea, T Fredriksen, L Lafontaine, ...
Cell 175 (3), 751-765. e16, 2018
2622018
Multivariate indicator Kriging approach using a GIS to classify soil degradation for Mediterranean agricultural lands
N Diodato, M Ceccarelli
Ecological Indicators 4 (3), 177-187, 2004
1592004
Upregulation of miR-21 by Ras in vivo and its role in tumor growth
D Frezzetti, M De Menna, P Zoppoli, C Guerra, A Ferraro, AM Bello, ...
Oncogene 30 (3), 275-286, 2011
1582011
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
TC Silva, A Colaprico, C Olsen, F D'Angelo, G Bontempi, M Ceccarelli, ...
F1000Research 5, 2016
1402016
Signaling networks associated with AKT activation in non-small cell lung cancer (NSCLC): new insights on the role of phosphatydil-inositol-3 kinase
M Scrima, C De Marco, F Fabiani, R Franco, G Pirozzi, G Rocco, M Ravo, ...
PloS one 7 (2), e30427, 2012
1312012
Single-cell transcriptome analysis of lineage diversity in high-grade glioma
J Yuan, HM Levitin, V Frattini, EC Bush, DM Boyett, J Samanamud, ...
Genome medicine 10 (1), 1-15, 2018
1222018
The molecular landscape of glioma in patients with Neurofibromatosis 1
F D’Angelo, M Ceccarelli, L Garofano, J Zhang, V Frattini, FP Caruso, ...
Nature medicine 25 (1), 176-187, 2019
1212019
Learning gene regulatory networks from only positive and unlabeled data
L Cerulo, C Elkan, M Ceccarelli
BMC bioinformatics 11 (1), 1-16, 2010
1202010
Interpolation processes using multivariate geostatistics for mapping of climatological precipitation mean in the Sannio Mountains (southern Italy)
N Diodato, M Ceccarelli
Earth Surface Processes and Landforms: The Journal of the British …, 2005
1152005
Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis
W Hendrickx, I Simeone, S Anjum, Y Mokrab, F Bertucci, P Finetti, ...
Oncoimmunology 6 (2), e1253654, 2017
1142017
Proteogenomic and metabolomic characterization of human glioblastoma
LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ...
Cancer Cell, 2021
1122021
A metabolic function of FGFR3-TACC3 gene fusions in cancer
V Frattini, SM Pagnotta, JJ Fan, MV Russo, SB Lee, L Garofano, J Zhang, ...
Nature 553 (7687), 222-227, 2018
1062018
UHRF1 coordinates peroxisome proliferator activated receptor gamma (PPARG) epigenetic silencing and mediates colorectal cancer progression
L Sabatino, A Fucci, M Pancione, V Carafa, A Nebbioso, C Pistore, ...
Oncogene, 2012
932012
Immune escape mechanisms in colorectal cancer pathogenesis and liver metastasis
M Pancione, G Giordano, A Remo, A Febbraro, L Sabatino, E Manfrin, ...
Journal of immunology research 2014, 2014
862014
TRAF7 protein promotes Lys-29-linked polyubiquitination of IκB kinase (IKKγ)/NF-κB essential modulator (NEMO) and p65/RelA protein and represses NF-κB activation
T Zotti, A Uva, A Ferravante, M Vessichelli, I Scudiero, M Ceccarelli, P Vito
Journal of Biological Chemistry 286 (26), 22924, 2011
792011
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