| ExPASy: SIB bioinformatics resource portal P Artimo, M Jonnalagedda, K Arnold, D Baratin, G Csardi, E De Castro, ... Nucleic acids research 40 (W1), W597-W603, 2012 | 2485 | 2012 |
| Qualitative simulation of genetic regulatory networks using piecewise-linear models H De Jong, JL Gouzé, C Hernandez, M Page, T Sari, J Geiselmann Bulletin of mathematical biology 66 (2), 301-340, 2004 | 564 | 2004 |
| Genetic Network Analyzer: qualitative simulation of genetic regulatory networks H de Jong, J Geiselmann, C Hernandez, M Page Bioinformatics 19 (3), 336-344, 2003 | 375 | 2003 |
| RSAT 2015: regulatory sequence analysis tools A Medina-Rivera, M Defrance, O Sand, C Herrmann, ... Nucleic acids research 43 (W1), W50-W56, 2015 | 284 | 2015 |
| Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer L Cantini, P Zakeri, C Hernandez, A Naldi, D Thieffry, E Remy, A Baudot Nature communications 12 (1), 1-12, 2021 | 184 | 2021 |
| Qualitative simulation of the initiation of sporulation in Bacillus subtilis H De Jong, J Geiselmann, G Batt, C Hernandez, M Page Bulletin of Mathematical Biology 66 (2), 261-299, 2004 | 171 | 2004 |
| ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors SR Starick, J Ibn-Salem, M Jurk, C Hernandez, MI Love, HR Chung, ... Genome research 25 (6), 825-835, 2015 | 147 | 2015 |
| The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 680, 2018 | 102 | 2018 |
| Logical modeling and analysis of cellular regulatory networks with ginsim 3.0 A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 646, 2018 | 101 | 2018 |
| Logical Modeling and Analysis of Cellular Regulatory Networks With GINsim 3.0. A Naldi, C Hernandez, W Abou-Jaoudé, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 646-646, 2018 | 101 | 2018 |
| Cooperative development of logical modelling standards and tools with CoLoMoTo A Naldi, PT Monteiro, C Müssel, HA Kestler, D Thieffry, I Xenarios, ... Bioinformatics 31 (7), 1154-1159, 2015 | 93 | 2015 |
| Hybrid modeling and simulation of genetic regulatory networks: A qualitative approach H Jong, JL Gouzé, C Hernandez, M Page, T Sari, J Geiselmann International Workshop on Hybrid Systems: Computation and Control, 267-282, 2003 | 85 | 2003 |
| Qualitative simulation of genetic regulatory networks: Method and application H De Jong, M Page, C Hernandez, J Geiselmann International Joint Conference on Artificial intelligence 17 (1), 67-73, 2001 | 80 | 2001 |
| Genomics in the long-read sequencing era EL van Dijk, D Naquin, K Gorrichon, Y Jaszczyszyn, R Ouazahrou, ... Trends in Genetics 39 (9), 649-671, 2023 | 63 | 2023 |
| A novel pulse-chase SILAC strategy measures changes in protein decay and synthesis rates induced by perturbation of proteostasis with an Hsp90 inhibitor I Fierro-Monti, J Racle, C Hernandez, P Waridel, V Hatzimanikatis, ... PloS one 8 (11), e80423, 2013 | 62 | 2013 |
| Quantitative proteomics identifies the membrane‐associated peroxidase GPx8 as a cellular substrate of the hepatitis C virus NS3‐4A protease K Morikawa, J Gouttenoire, C Hernandez, VL Dao Thi, HTL Tran, ... Hepatology 59 (2), 423-433, 2014 | 55 | 2014 |
| Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4+ T cell activation O Rodríguez-Jorge, LA Kempis-Calanis, W Abou-Jaoudé, ... Science signaling 12 (577), eaar3641, 2019 | 48 | 2019 |
| Addressing trypsin bias in large scale (phospho) proteome analysis by size exclusion chromatography and secondary digestion of large post-trypsin peptides BQ Tran, C Hernandez, P Waridel, A Potts, J Barblan, F Lisacek, ... Journal of proteome research 10 (2), 800-811, 2010 | 46 | 2010 |
| Dynamic impacts of the inhibition of the molecular chaperone Hsp90 on the T-cell proteome have implications for anti-cancer therapy I Fierro-Monti, P Echeverria, J Racle, C Hernandez, D Picard, M Quadroni PLoS One 8 (11), e80425, 2013 | 45 | 2013 |
| Aldente and BioGraph: An improved peptide mass fingerprinting protein identification environment M Tuloup, C Hernandez, I Coro, C Hoogland, PA Binz, RD Appel Proceedings of the Swiss Proteomics Society 2003 Congress: Understanding …, 2003 | 41 | 2003 |
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