Challenges in microbial ecology: building predictive understanding of community function and dynamics S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ... The ISME journal 10 (11), 2557-2568, 2016 | 660 | 2016 |
Synthetic microbial communities T Gro©¬kopf, OS Soyer Current opinion in microbiology 18, 72-77, 2014 | 460 | 2014 |
Cooperation in microbial communities and their biotechnological applications M Cavaliere, S Feng, OS Soyer, JI Jiménez Environmental microbiology 19 (8), 2949-2963, 2017 | 174 | 2017 |
The evolution of connectivity in metabolic networks T Pfeiffer, OS Soyer, S Bonhoeffer PLoS biology 3 (7), e228, 2005 | 156 | 2005 |
The roles of integration in molecular systems biology MA O¡¯malley, OS Soyer Studies in History and Philosophy of Science Part C: Studies in History and ¡¦, 2012 | 147 | 2012 |
Evolution of complexity in signaling pathways OS Soyer, S Bonhoeffer Proceedings of the National Academy of Sciences 103 (44), 16337-16342, 2006 | 105 | 2006 |
Microbial diversity arising from thermodynamic constraints T Gro©¬kopf, OS Soyer The ISME journal 10 (11), 2725-2733, 2016 | 89 | 2016 |
STRONG: metagenomics strain resolution on assembly graphs C Quince, S Nurk, S Raguideau, R James, OS Soyer, JK Summers, ... Genome biology 22, 1-34, 2021 | 85 | 2021 |
Evolutionary systems biology OS Soyer Springer Science & Business Media, 2012 | 75 | 2012 |
Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment T Gro©¬kopf, J Consuegra, J Gaffé, JC Willison, RE Lenski, OS Soyer, ... BMC evolutionary biology 16, 1-15, 2016 | 74 | 2016 |
A single community dominates structure and function of a mixture of multiple methanogenic communities P Sierocinski, K Milferstedt, F Bayer, T Gro©¬kopf, M Alston, S Bastkowski, ... Current Biology 27 (21), 3390-3395. e4, 2017 | 67 | 2017 |
Evolution under fluctuating environments explains observed robustness in metabolic networks OS Soyer, T Pfeiffer PLoS Computational Biology 6 (8), e1000907, 2010 | 66 | 2010 |
Signal transduction networks: topology, response and biochemical processes OS Soyer, M Salathe, S Bonhoeffer Journal of theoretical biology 238 (2), 416-425, 2006 | 64 | 2006 |
Impact of spatial organization on a novel auxotrophic interaction among soil microbes X Jiang, C Zerfa©¬, S Feng, R Eichmann, M Asally, P Schäfer, OS Soyer The ISME journal 12 (6), 1443-1456, 2018 | 60 | 2018 |
Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways K McClymont, OS Soyer Nucleic acids research 41 (11), e113-e113, 2013 | 60 | 2013 |
Scanning ion conductance microscopy reveals differences in the ionic environments of gram-positive and negative bacteria K Cremin, BA Jones, J Teahan, GN Meloni, D Perry, C Zerfass, M Asally, ... Analytical chemistry 92 (24), 16024-16032, 2020 | 57 | 2020 |
Simulating the evolution of signal transduction pathways OS Soyer, T Pfeiffer, S Bonhoeffer Journal of theoretical biology 241 (2), 223-232, 2006 | 57 | 2006 |
Bistability in feedback circuits as a byproduct of evolution of evolvability H Kuwahara, OS Soyer Molecular systems biology 8 (1), 564, 2012 | 55 | 2012 |
Depicting a protein¡¯s two faces: GPCR classification by phylogenetic tree-based HMMs B Qian, OS Soyer, RR Neubig, RA Goldstein FEBS letters 554 (1-2), 95-99, 2003 | 55 | 2003 |
Probing conformational changes in neurotransmitter transporters: a structural context NR Goldberg, T Beuming, OS Soyer, RA Goldstein, H Weinstein, ... European journal of pharmacology 479 (1-3), 3-12, 2003 | 54 | 2003 |