Mahdi Zamanighomi
Mahdi Zamanighomi
Broad Institute of MIT and Harvard
Verified email at
Cited by
Cited by
Next-generation characterization of the cancer cell line encyclopedia
M Ghandi, FW Huang, J Jané-Valbuena, GV Kryukov, CC Lo, ...
Nature 569 (7757), 503-508, 2019
Integrative analysis of single-cell genomics data by coupled nonnegative matrix factorizations
Z Duren, X Chen, M Zamanighomi, W Zeng, A Satpathy, H Chang, ...
Proceedings of the National Academy of Sciences 115 (30), 7723-7728, 2018
Unsupervised clustering and epigenetic classification of single cells
M Zamanighomi, Z Lin, T Daley, X Chen, Z Duren, A Schep, WJ Greenleaf, ...
Nature communications 9 (1), 2410, 2018
Paralog knockout profiling identifies DUSP4 and DUSP6 as a digenic dependence in MAPK pathway-driven cancers
T Ito, MJ Young, R Li, S Jain, A Wernitznig, JM Krill-Burger, CT Lemke, ...
Nature genetics 53 (12), 1664-1672, 2021
Simultaneous dimension reduction and adjustment for confounding variation
Z Lin, C Yang, Y Zhu, J Duchi, Y Fu, Y Wang, B Jiang, M Zamanighomi, ...
Proceedings of the National Academy of Sciences 113 (51), 14662-14667, 2016
GEMINI: a variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens
M Zamanighomi, SS Jain, T Ito, D Pal, TP Daley, WR Sellers
Genome biology 20, 1-10, 2019
Kinematic analysis of the gait of adult sheep during treadmill locomotion: parameter values, allowable total error, and potential for use in evaluating spinal cord injury
S Safayi, ND Jeffery, SK Shivapour, M Zamanighomi, TJ Zylstra, ...
Journal of the neurological sciences 358 (1-2), 107-112, 2015
Comparative optimization of combinatorial CRISPR screens
R Li, O Klingbeil, D Monducci, MJ Young, DJ Rodriguez, Z Bayyat, ...
Nature Communications 13 (1), 2469, 2022
Model-based approach to the joint analysis of single-cell data on chromatin accessibility and gene expression
Z Lin, M Zamanighomi, T Daley, S Ma, WH Wong
Predicting transcription factor binding motifs from DNA-binding domains, chromatin accessibility and gene expression data
M Zamanighomi, Z Lin, Y Wang, R Jiang, WH Wong
Nucleic acids research 45 (10), 5666-5677, 2017
Multiple-access channel with correlated states and cooperating encoders
MJ Emadi, M Zamanighomi, MR Aref
IET communications 6 (13), 1857-1867, 2012
A new method for variable elimination in systems of inequations
FS Chaharsooghi, MJ Emadi, M Zamanighomi, MR Aref
2011 IEEE International Symposium on Information Theory Proceedings, 1215-1219, 2011
Linear minimum mean-square error estimation based on high-dimensional data with missing values
M Zamanighomi, Z Wang, K Slavakis, GB Giannakis
2014 48th Annual Conference on Information Sciences and Systems (CISS), 1-5, 2014
Degrees of freedom region of wireless X networks based on real interference alignment
M Zamanighomi, Z Wang
IEEE Transactions on Information Theory 62 (4), 1931-1941, 2016
Multiple-antenna interference channels with real interference alignment and receive antenna joint processing based on simultaneous Diophantine approximation
M Zamanighomi, Z Wang
IEEE transactions on information theory 60 (8), 4757-4769, 2014
Gene regulatory network inference from perturbed time-series expression data via ordered dynamical expansion of non-steady state actors
M Zamanighomi, M Zamanian, M Kimber, Z Wang
IEEE/ACM transactions on computational biology and bioinformatics 15 (4 …, 2015
Estimating high-dimensional covariance matrices with misses for Kronecker product expansion models
M Zamanighomi, Z Wang, GB Giannakis
2016 IEEE International Conference on Acoustics, Speech and Signal …, 2016
CLIFF, a bioinformatics software tool to explore molecular differences between two sets of cancer cell lines
A Wernitznig, JJ Lipp, T Zichner, D Gerlach, MJ Bauer, T Voss, A Schlattl, ...
Clin. Res. Exclud. Clin. Trials 80, 3227, 2020
Systems and methods for creating biomolecule embeddings
H Guturu, M Zamanighomi
US Patent App. 18/164,542, 2023
Deep plasma proteomics at scale enabling proteogenomic analyses in a lung cancer (NSCLC) study
M Zamanighomi, H Guturu, J Wang, A Alavi, T Brown, D Hornburg, ...
Cancer Research 82 (12_Supplement), 6339-6339, 2022
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Articles 1–20