| Gene expression variability across cells and species shapes innate immunity T Hagai, X Chen, RJ Miragaia, R Rostom, T Gomes, N Kunowska, ... Nature 563 (7730), 197-202, 2018 | 210 | 2018 |
| Host-pathogen coevolution and the emergence of broadly neutralizing antibodies in chronic infections A Nourmohammad, J Otwinowski, JB Plotkin PLoS genetics 12 (7), e1006171, 2016 | 82 | 2016 |
| Adaptive evolution of gene expression in Drosophila A Nourmohammad, J Rambeau, T Held, V Kovacova, J Berg, M Lässig Cell reports 20 (6), 1385-1395, 2017 | 69 | 2017 |
| Deep generative selection models of T and B cell receptor repertoires with soNNia G Isacchini, AM Walczak, T Mora, A Nourmohammad Proceedings of the National Academy of Sciences 118 (14), e2023141118, 2021 | 54 | 2021 |
| Major antigenic site B of human influenza H3N2 viruses has an evolving local fitness landscape NC Wu, J Otwinowski, AJ Thompson, CM Nycholat, A Nourmohammad, ... Nature communications 11 (1), 1233, 2020 | 54 | 2020 |
| Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19 Z Montague, H Lv, J Otwinowski, WS DeWitt, G Isacchini, GK Yip, WW Ng, ... Cell Reports 35 (8), 2021 | 48* | 2021 |
| The size of the immune repertoire of bacteria S Bradde, A Nourmohammad, S Goyal, V Balasubramanian Proceedings of the National Academy of Sciences 117 (10), 5144-5151, 2020 | 46 | 2020 |
| Fierce selection and interference in B-cell repertoire response to chronic HIV-1 A Nourmohammad, J Otwinowski, M Łuksza, T Mora, AM Walczak Molecular biology and evolution 36 (10), 2184-2194, 2019 | 44 | 2019 |
| Universality and predictability in molecular quantitative genetics A Nourmohammad, T Held, M Lässig Current opinion in genetics & development 23 (6), 684-693, 2013 | 35 | 2013 |
| Evolution of molecular phenotypes under stabilizing selection A Nourmohammad, S Schiffels, M Lässig Journal of Statistical Mechanics: Theory and Experiment 2013 (01), P01012, 2013 | 34 | 2013 |
| Analytical and numerical studies of sequence dependence of passage times for translocation of heterobiopolymers through nanopores RH Abdolvahab, F Roshani, A Nourmohammad, M Sahimi, M Tabar The Journal of Chemical Physics 129 (23), 2008 | 27 | 2008 |
| Optimal evolutionary control for artificial selection on molecular phenotypes A Nourmohammad, C Eksin Physical Review X 11 (1), 011044, 2021 | 24 | 2021 |
| Adaptive evolution of molecular phenotypes T Held, A Nourmohammad, M Lässig Journal of Statistical Mechanics: Theory and Experiment 2014 (9), P09029, 2014 | 24 | 2014 |
| Formation of regulatory modules by local sequence duplication A Nourmohammad, M Lässig PLoS Computational Biology 7 (10), e1002167, 2011 | 23 | 2011 |
| Antigenic evolution of human influenza H3N2 neuraminidase is constrained by charge balancing Y Wang, R Lei, A Nourmohammad, NC Wu Elife 10, e72516, 2021 | 22 | 2021 |
| Design of an optimal combination therapy with broadly neutralizing antibodies to suppress HIV-1 C LaMont, J Otwinowski, K Vanshylla, H Gruell, F Klein, ... Elife 11, e76004, 2022 | 20 | 2022 |
| Optimal evolutionary decision-making to store immune memory OH Schnaack, A Nourmohammad Elife 10, e61346, 2021 | 18 | 2021 |
| Generative models of T-cell receptor sequences G Isacchini, Z Sethna, Y Elhanati, A Nourmohammad, AM Walczak, ... Physical Review E 101 (6), 062414, 2020 | 10 | 2020 |
| Learning the shape of protein microenvironments with a holographic convolutional neural network MN Pun, A Ivanov, Q Bellamy, Z Montague, C LaMont, P Bradley, ... Proceedings of the National Academy of Sciences 121 (6), e2300838121, 2024 | 9* | 2024 |
| Steering and controlling evolution—from bioengineering to fighting pathogens M Lässig, V Mustonen, A Nourmohammad Nature Reviews Genetics 24 (12), 851-867, 2023 | 9 | 2023 |
