Marinka Zitnik
Title
Cited by
Cited by
Year
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
11822013
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
4122018
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
2752017
Open graph benchmark: Datasets for machine learning on graphs
W Hu, M Fey, M Zitnik, Y Dong, H Ren, B Liu, M Catasta, J Leskovec
arXiv preprint arXiv:2005.00687, 2020
2322020
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge…, 2018
202*2018
Gnnexplainer: Generating explanations for graph neural networks
R Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems 32, 9240, 2019
200*2019
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
1752019
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
169*2015
Strategies for pre-training graph neural networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
1492019
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
1382017
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
1362019
Genome-wide localization study of yeast Pex11 identifies peroxisome–mitochondria interactions through the ERMES complex
MM Ušaj, M Brložnik, P Kaferle, M Žitnik, H Wolinski, F Leitner, ...
Journal of Molecular Biology 427 (11), 2072-2087, 2015
1092015
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
992018
Discovering disease-disease associations by fusing systems-level molecular data
M Žitnik, V Janjić, C Larminie, B Zupan, N Pržulj
Scientific Reports 3, 3202, 2013
922013
Network medicine framework for identifying drug-repurposing opportunities for COVID-19
DM Gysi, Do Valle, M Zitnik, A Ameli, X Gan, O Varol, SD Ghiassian, ...
Proceedings of the National Academy of Sciences 118 (19), 2021
882021
Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins
M Stražar, M Žitnik, B Zupan, J Ule, T Curk
Bioinformatics 32 (10), 1527-1535, 2016
812016
NIMFA : A Python Library for Nonnegative Matrix Factorization
M Zitnik, B Zupan
Journal of Machine Learning Research 13, 849-853, 2012
762012
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
602018
Large-scale analysis of disease pathways in the human interactome
M Agrawal*, M Zitnik*, (*first co-author), J Leskovec
Pacific Symposium on Biocomputing 23, 111--122, 2018
582018
A comprehensive structural, biochemical and biological profiling of the human NUDIX hydrolase family
J Carreras-Puigvert, M Zitnik, AS Jemth, M Carter, JE Unterlass, ...
Nature Communications 8 (1), 1541, 2017
582017
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Articles 1–20