A community effort to assess and improve drug sensitivity prediction algorithms JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ... Nature biotechnology 32 (12), 1202-1212, 2014 | 755 | 2014 |
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019 | 274 | 2019 |
Federated collaborative filtering for privacy-preserving personalized recommendation system M Ammad-Ud-Din, E Ivannikova, SA Khan, W Oyomno, Q Fu, KE Tan, ... arXiv preprint arXiv:1901.09888, 2019 | 219 | 2019 |
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open … The Lancet Oncology, 2016 | 161* | 2016 |
Drug target commons: a community effort to build a consensus knowledge base for drug-target interactions J Tang, B Ravikumar, Z Alam, A Rebane, M Vähä-Koskela, G Peddinti, ... Cell chemical biology 25 (2), 224-229. e2, 2018 | 127 | 2018 |
Kernelized Bayesian matrix factorization M Gonen, SA Khan, S Kaski Proceedings of The 30th International Conference on Machine Learning 28, 864-872, 2013 | 122 | 2013 |
Prediction of human population responses to toxic compounds by a collaborative competition F Eduati, LM Mangravite, T Wang, H Tang, JC Bare, R Huang, T Norman, ... Nature biotechnology 33 (9), 933-940, 2015 | 121 | 2015 |
Bayesian group factor analysis S Virtanen, A Klami, S Khan, S Kaski Artificial Intelligence and Statistics, 1269-1277, 2012 | 112 | 2012 |
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ... Nature communications 7 (1), 12460, 2016 | 92 | 2016 |
Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization M Ammad-Ud-Din, SA Khan, D Malani, A Murumägi, O Kallioniemi, ... Bioinformatics 32 (17), i455-i463, 2016 | 89 | 2016 |
Discovery of novel drug sensitivities in T-PLL by high-throughput ex vivo drug testing and mutation profiling EI Andersson, S Pützer, B Yadav, O Dufva, S Khan, L He, L Sellner, ... Leukemia 32 (3), 774-787, 2018 | 86 | 2018 |
Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression M Ammad-Ud-Din, SA Khan, K Wennerberg, T Aittokallio Bioinformatics 33 (14), i359-i368, 2017 | 71 | 2017 |
Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach M Ali, SA Khan, K Wennerberg, T Aittokallio Bioinformatics 34 (8), 1353-1362, 2018 | 66 | 2018 |
Federated multi-view matrix factorization for personalized recommendations A Flanagan, W Oyomno, A Grigorievskiy, KE Tan, SA Khan, ... Machine Learning and Knowledge Discovery in Databases: European Conference …, 2021 | 63 | 2021 |
Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis SA Khan, S Virtanen, OP Kallioniemi, K Wennerberg, A Poso, S Kaski Bioinformatics 30 (17), i497-i504, 2014 | 50 | 2014 |
Bayesian multi-view tensor factorization SA Khan, S Kaski Machine Learning and Knowledge Discovery in Databases: European Conference …, 2014 | 39 | 2014 |
Convex factorization machine for toxicogenomics prediction M Yamada, W Lian, A Goyal, J Chen, K Wimalawarne, SA Khan, S Kaski, ... Proceedings of the 23rd ACM SIGKDD international conference on knowledge …, 2017 | 38* | 2017 |
Bayesian multi-tensor factorization SA Khan, E Leppäaho, S Kaski Machine Learning 105 (2), 233-253, 2016 | 33 | 2016 |
Scalable similarity matching in streaming time series A Marascu, SA Khan, T Palpanas Advances in Knowledge Discovery and Data Mining: 16th Pacific-Asia …, 2012 | 27 | 2012 |
Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs SA Khan, A Faisal, JP Mpindi, JA Parkkinen, T Kalliokoski, A Poso, ... BMC bioinformatics 13, 1-15, 2012 | 25 | 2012 |