| ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ... Genome research 27 (5), 768-777, 2017 | 641 | 2017 |
| ARCS: scaffolding genome drafts with linked reads S Yeo, L Coombe, RL Warren, J Chu, I Birol Bioinformatics 34 (5), 725-731, 2018 | 169 | 2018 |
| Tigmint: correcting assembly errors using linked reads from large molecules SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ... Bmc Bioinformatics 19 (1), 1-10, 2018 | 108 | 2018 |
| ntEdit: scalable genome sequence polishing RL Warren, L Coombe, H Mohamadi, J Zhang, B Jaquish, N Isabel, ... Bioinformatics 35 (21), 4430-4432, 2019 | 89 | 2019 |
| ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers L Coombe, J Zhang, BP Vandervalk, J Chu, SD Jackman, I Birol, ... BMC bioinformatics 19 (1), 234, 2018 | 86 | 2018 |
| Complete mitochondrial genome of a gymnosperm, Sitka spruce (Picea sitchensis), indicates a complex physical structure SD Jackman, L Coombe, RL Warren, H Kirk, E Trinh, T MacLeod, ... Genome Biology and Evolution, 2020 | 55 | 2020 |
| Assembly of the complete Sitka spruce chloroplast genome using 10X Genomics’ GemCode sequencing data L Coombe, RL Warren, SD Jackman, C Yang, BP Vandervalk, RA Moore, ... PloS one 11 (9), e0163059, 2016 | 53 | 2016 |
| The genome of the North American brown bear or grizzly: Ursus arctos ssp. horribilis GA Taylor, H Kirk, L Coombe, SD Jackman, J Chu, K Tse, D Cheng, ... Genes 9 (12), 598, 2018 | 38 | 2018 |
| LongStitch: high-quality genome assembly correction and scaffolding using long reads L Coombe, JX Li, T Lo, J Wong, V Nikolic, RL Warren, I Birol BMC Bioinformatics 22 (1), 1-13, 2021 | 37 | 2021 |
| ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs L Coombe, V Nikolić, J Chu, I Birol, RL Warren Bioinformatics 36 (12), 3885-3887, 2020 | 27 | 2020 |
| Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes KK Gagalova, RL Warren, L Coombe, J Wong, KM Nip, MMS Yuen, ... The Plant Journal, 2022 | 21 | 2022 |
| The western redcedar genome reveals low genetic diversity in a self-compatible conifer TJ Shalev, OG El-Dien, MMS Yuen, S Shengqiang, SD Jackman, ... Genome Research 32 (10), 1952-1964, 2022 | 19 | 2022 |
| Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage D Lin, D Sutherland, SI Aninta, N Louie, KM Nip, C Li, A Yanai, L Coombe, ... Antibiotics 11 (7), 952, 2022 | 14 | 2022 |
| ARCS: assembly roundup by chromium scaffolding S Yeo, L Coombe, J Chu, RL Warren, I Birol BioRxiv, 100750, 2017 | 13 | 2017 |
| Linear time complexity de novo long read genome assembly with GoldRush J Wong, L Coombe, V Nikolić, E Zhang, KM Nip, P Sidhu, RL Warren, ... Nature Communications 14 (1), 2906, 2023 | 11 | 2023 |
| Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada D Lin, L Coombe, SD Jackman, KK Gagalova, RL Warren, SA Hammond, ... Microbiology Resource Announcements 8 (23), 2019 | 11 | 2019 |
| ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads L Coombe, RL Warren, J Wong, V Nikolic, I Birol Current Protocols 3 (4), e733, 2023 | 8 | 2023 |
| Associating Biological Activity and Predicted Structure of Antimicrobial Peptides from Amphibians and Insects A Richter, D Sutherland, H Ebrahimikondori, A Babcock, N Louie, C Li, ... Antibiotics 11 (12), 1710, 2022 | 8 | 2022 |
| Complete Chloroplast Genome Sequence of an Engelmann Spruce (Picea engelmannii, Genotype Se404-851) from Western Canada D Lin, L Coombe, SD Jackman, KK Gagalova, RL Warren, SA Hammond, ... Microbiology Resource Announcements 8 (24), 2019 | 8 | 2019 |
| btllib: A C++ library with Python interface for efficient genomic sequence processing V Nikolić, P Kazemi, L Coombe, J Wong, A Afshinfard, J Chu, RL Warren, ... Journal of Open Source Software 7 (79), 4720, 2022 | 7 | 2022 |
