Lauren Coombe
Lauren Coombe
BC Cancer Genome Sciences Centre
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ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ...
Genome research 27 (5), 768-777, 2017
ARCS: scaffolding genome drafts with linked reads
S Yeo, L Coombe, RL Warren, J Chu, I Birol
Bioinformatics 34 (5), 725-731, 2018
Tigmint: correcting assembly errors using linked reads from large molecules
SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ...
Bmc Bioinformatics 19 (1), 1-10, 2018
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers
L Coombe, J Zhang, BP Vandervalk, J Chu, SD Jackman, I Birol, ...
BMC bioinformatics 19 (1), 234, 2018
ntEdit: scalable genome sequence polishing
RL Warren, L Coombe, H Mohamadi, J Zhang, B Jaquish, N Isabel, ...
Bioinformatics 35 (21), 4430-4432, 2019
Complete mitochondrial genome of a gymnosperm, Sitka spruce (Picea sitchensis), indicates a complex physical structure
SD Jackman, L Coombe, RL Warren, H Kirk, E Trinh, T MacLeod, ...
Genome Biology and Evolution, 2020
Assembly of the complete Sitka spruce chloroplast genome using 10X Genomics’ GemCode sequencing data
L Coombe, RL Warren, SD Jackman, C Yang, BP Vandervalk, RA Moore, ...
PloS one 11 (9), e0163059, 2016
The genome of the North American brown bear or grizzly: Ursus arctos ssp. horribilis
GA Taylor, H Kirk, L Coombe, SD Jackman, J Chu, K Tse, D Cheng, ...
Genes 9 (12), 598, 2018
LongStitch: high-quality genome assembly correction and scaffolding using long reads
L Coombe, JX Li, T Lo, J Wong, V Nikolic, RL Warren, I Birol
BMC Bioinformatics 22 (1), 1-13, 2021
ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs
L Coombe, V Nikolić, J Chu, I Birol, RL Warren
Bioinformatics 36 (12), 3885-3887, 2020
Spruce giga‐genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes
KK Gagalova, RL Warren, L Coombe, J Wong, KM Nip, MMS Yuen, ...
The Plant Journal, 2022
The western redcedar genome reveals low genetic diversity in a self-compatible conifer
TJ Shalev, OG El-Dien, MMS Yuen, S Shengqiang, SD Jackman, ...
Genome Research 32 (10), 1952-1964, 2022
Mining Amphibian and Insect Transcriptomes for Antimicrobial Peptide Sequences with rAMPage
D Lin, D Sutherland, SI Aninta, N Louie, KM Nip, C Li, A Yanai, L Coombe, ...
Antibiotics 11 (7), 952, 2022
ARCS: assembly roundup by chromium scaffolding
S Yeo, L Coombe, J Chu, RL Warren, I Birol
BioRxiv, 100750, 2017
Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada
D Lin, L Coombe, SD Jackman, KK Gagalova, RL Warren, SA Hammond, ...
Microbiology Resource Announcements 8 (23), 2019
Linear time complexity de novo long read genome assembly with GoldRush
J Wong, L Coombe, V Nikolić, E Zhang, KM Nip, P Sidhu, RL Warren, ...
Nature Communications 14 (1), 2906, 2023
ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads
L Coombe, RL Warren, J Wong, V Nikolic, I Birol
Current Protocols 3 (4), e733, 2023
Complete Chloroplast Genome Sequence of an Engelmann Spruce (Picea engelmannii, Genotype Se404-851) from Western Canada
D Lin, L Coombe, SD Jackman, KK Gagalova, RL Warren, SA Hammond, ...
Microbiology Resource Announcements 8 (24), 2019
Associating Biological Activity and Predicted Structure of Antimicrobial Peptides from Amphibians and Insects
A Richter, D Sutherland, H Ebrahimikondori, A Babcock, N Louie, C Li, ...
Antibiotics 11 (12), 1710, 2022
btllib: A C++ library with Python interface for efficient genomic sequence processing
V Nikolić, P Kazemi, L Coombe, J Wong, A Afshinfard, J Chu, RL Warren, ...
Journal of Open Source Software 7 (79), 4720, 2022
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