Felix Krueger
Felix Krueger
The Babraham Institute, Bioinformatics Group
Verified email at babraham.ac.uk - Homepage
Title
Cited by
Cited by
Year
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
F Krueger, SR Andrews
bioinformatics 27 (11), 1571-1572, 2011
18102011
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
G Ficz, MR Branco, S Seisenberger, F Santos, F Krueger, TA Hore, ...
Nature 473 (7347), 398-402, 2011
11022011
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution
MJ Booth, MR Branco, G Ficz, D Oxley, F Krueger, W Reik, ...
Science 336 (6083), 934-937, 2012
7242012
The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells
S Seisenberger, S Andrews, F Krueger, J Arand, J Walter, F Santos, ...
Molecular cell 48 (6), 849-862, 2012
6642012
Resetting transcription factor control circuitry toward ground-state pluripotency in human
Y Takashima, G Guo, R Loos, J Nichols, G Ficz, F Krueger, D Oxley, ...
Cell 158 (6), 1254-1269, 2014
5352014
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
SA Smallwood, HJ Lee, C Angermueller, F Krueger, H Saadeh, J Peat, ...
Nature methods 11 (8), 817-820, 2014
5302014
Dynamic CpG island methylation landscape in oocytes and preimplantation embryos
SA Smallwood, S Tomizawa, F Krueger, N Ruf, N Carli, ...
Nature genetics 43 (8), 811, 2011
5112011
Trim galore
F Krueger
A wrapper tool around Cutadapt and FastQC to consistently apply quality and …, 2015
3602015
FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency
G Ficz, TA Hore, F Santos, HJ Lee, W Dean, J Arand, F Krueger, D Oxley, ...
Cell stem cell 13 (3), 351-359, 2013
3162013
FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency
G Ficz, TA Hore, F Santos, HJ Lee, W Dean, J Arand, F Krueger, D Oxley, ...
Cell stem cell 13 (3), 351-359, 2013
3162013
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity
C Angermueller, SJ Clark, HJ Lee, IC Macaulay, MJ Teng, TX Hu, ...
Nature methods 13 (3), 229-232, 2016
2942016
DNA methylome analysis using short bisulfite sequencing data
F Krueger, B Kreck, A Franke, SR Andrews
Nature methods 9 (2), 145, 2012
2882012
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
SJ Clark, R Argelaguet, CA Kapourani, TM Stubbs, HJ Lee, ...
Nature communications 9 (1), 1-9, 2018
1492018
Multi-tissue DNA methylation age predictor in mouse
TM Stubbs, MJ Bonder, AK Stark, F Krueger, F von Meyenn, O Stegle, ...
Genome biology 18 (1), 68, 2017
1162017
Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
S Patalano, A Vlasova, C Wyatt, P Ewels, F Camara, PG Ferreira, ...
Proceedings of the National Academy of Sciences 112 (45), 13970-13975, 2015
1162015
Efficient targeted DNA methylation with chimeric dCas9–Dnmt3a–Dnmt3L methyltransferase
P Stepper, G Kungulovski, RZ Jurkowska, T Chandra, F Krueger, ...
Nucleic acids research 45 (4), 1703-1713, 2017
1032017
Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape
L Veselovska, SA Smallwood, H Saadeh, KR Stewart, F Krueger, ...
Genome biology 16 (1), 209, 2015
872015
Genome-wide bisulfite sequencing in zygotes identifies demethylation targets and maps the contribution of TET3 oxidation
JR Peat, W Dean, SJ Clark, F Krueger, SA Smallwood, G Ficz, JK Kim, ...
Cell reports 9 (6), 1990-2000, 2014
872014
Large scale loss of data in low-diversity illumina sequencing libraries can be recovered by deferred cluster calling
F Krueger, SR Andrews, CS Osborne
PloS one 6 (1), 2011
842011
Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism
O Hahn, S Grönke, TM Stubbs, G Ficz, O Hendrich, F Krueger, S Andrews, ...
Genome biology 18 (1), 56, 2017
822017
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Articles 1–20