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Greg Finak
Greg Finak
CTO, Ozette Technologies
Verified email at ozette.ai - Homepage
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Cited by
Year
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
G Finak, A McDavid, M Yajima, J Deng, V Gersuk, AK Shalek, CK Slichter, ...
Genome biology 16, 1-13, 2015
23012015
Stromal gene expression predicts clinical outcome in breast cancer
G Finak, N Bertos, F Pepin, S Sadekova, M Souleimanova, H Zhao, ...
Nature medicine 14 (5), 518-527, 2008
18772008
Critical assessment of automated flow cytometry data analysis techniques
N Aghaeepour, G Finak, FlowCAP Consortium, Dream Consortium, ...
Nature methods 10 (3), 228-238, 2013
6432013
Safety and immunogenicity of a mRNA rabies vaccine in healthy adults: an open-label, non-randomised, prospective, first-in-human phase 1 clinical trial
M Alberer, U Gnad-Vogt, HS Hong, KT Mehr, L Backert, G Finak, ...
The Lancet 390 (10101), 1511-1520, 2017
4862017
Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments
A McDavid, G Finak, PK Chattopadyay, M Dominguez, L Lamoreaux, ...
Bioinformatics 29 (4), 461-467, 2013
3972013
Standardizing flow cytometry immunophenotyping analysis from the human immunophenotyping consortium
G Finak, M Langweiler, M Jaimes, M Malek, J Taghiyar, Y Korin, ...
Scientific reports 6 (1), 1-11, 2016
2962016
COMPASS identifies T-cell subsets correlated with clinical outcomes
L Lin, G Finak, K Ushey, C Seshadri, TR Hawn, N Frahm, TJ Scriba, ...
Nature biotechnology 33 (6), 610-616, 2015
2552015
Regulation of endocytosis via the oxygen-sensing pathway
Y Wang, O Roche, MS Yan, G Finak, AJ Evans, JL Metcalf, BE Hast, ...
Nature medicine 15 (3), 319-324, 2009
2242009
flowCore: Basic structures for flow cytometry data
B Ellis, P Haaland, F Hahne, N Le Meur, N Gopalakrishnan, J Spidlen, ...
R package version 1 (0), 2019
1872019
OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis
G Finak, J Frelinger, W Jiang, EW Newell, J Ramey, MM Davis, ...
PLoS computational biology 10 (8), e1003806, 2014
1872014
Gene expression signatures of morphologically normal breast tissue identify basal-like tumors
G Finak, S Sadekova, F Pepin, M Hallett, S Meterissian, F Halwani, ...
Breast Cancer Research 8, 1-18, 2006
1762006
Hypoxia promotes ligand-independent EGF receptor signaling via hypoxia-inducible factor–mediated upregulation of caveolin-1
Y Wang, O Roche, C Xu, EH Moriyama, P Heir, J Chung, FC Roos, ...
Proceedings of the National Academy of Sciences 109 (13), 4892-4897, 2012
1502012
Merging mixture components for cell population identification in flow cytometry
G Finak, A Bashashati, R Brinkman, R Gottardo
Advances in bioinformatics 2009, 2009
1432009
Distinct activation thresholds of human conventional and innate-like memory T cells
CK Slichter, A McDavid, HW Miller, G Finak, BJ Seymour, JP McNevin, ...
JCI insight 1 (8), 2016
1392016
flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification
M Malek, MJ Taghiyar, L Chong, G Finak, R Gottardo, RR Brinkman
Bioinformatics 31 (4), 606-607, 2014
1222014
Optimizing transformations for automated, high throughput analysis of flow cytometry data
G Finak, JM Perez, A Weng, R Gottardo
BMC bioinformatics 11, 1-13, 2010
1142010
Vaccination induces HIV broadly neutralizing antibody precursors in humans
DJ Leggat, KW Cohen, JR Willis, WJ Fulp, AC Decamp, O Kalyuzhniy, ...
Science 378 (6623), eadd6502, 2022
882022
Higher T-cell responses induced by DNA/rAd5 HIV-1 preventive vaccine are associated with lower HIV-1 infection risk in an efficacy trial
HE Janes, KW Cohen, N Frahm, SC De Rosa, B Sanchez, J Hural, ...
The Journal of infectious diseases 215 (9), 1376-1385, 2017
872017
Highly multiplexed quantitation of gene expression on single cells
MH Dominguez, PK Chattopadhyay, S Ma, L Lamoreaux, A McDavid, ...
Journal of immunological methods 391 (1-2), 133-145, 2013
862013
Modeling bi-modality improves characterization of cell cycle on gene expression in single cells
A McDavid, L Dennis, P Danaher, G Finak, M Krouse, A Wang, P Webster, ...
PLoS computational biology 10 (7), e1003696, 2014
802014
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