Ryan McGreevy
Ryan McGreevy
Verified email at ks.uiuc.edu - Homepage
Title
Cited by
Cited by
Year
Structural mechanism of voltage-dependent gating in an isolated voltage-sensing domain
Q Li, S Wanderling, M Paduch, D Medovoy, A Singharoy, R McGreevy, ...
Nature structural & molecular biology 21 (3), 244, 2014
2002014
Scalable molecular dynamics on CPU and GPU architectures with NAMD
JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ...
The Journal of chemical physics 153 (4), 044130, 2020
1542020
Molecular dynamics-based refinement and validation for sub-5 cryo-electron microscopy maps
A Singharoy, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten
Elife 5, e16105, 2016
862016
Symmetry-restrained flexible fitting for symmetric EM maps
KY Chan, J Gumbart, R McGreevy, JM Watermeyer, BT Sewell, ...
Structure 19 (9), 1211-1218, 2011
632011
Computational methodologies for real-space structural refinement of large macromolecular complexes
BC Goh, JA Hadden, RC Bernardi, A Singharoy, R McGreevy, T Rudack, ...
Annual Review of Biophysics 45, 253-278, 2016
592016
Advances in the molecular dynamics flexible fitting method for cryo-EM modeling
R McGreevy, I Teo, A Singharoy, K Schulten
Methods 100, 50-60, 2016
532016
GPU-accelerated analysis and visualization of large structures solved by molecular dynamics flexible fitting
JE Stone, R McGreevy, B Isralewitz, K Schulten
Faraday discussions 169, 265-283, 2014
442014
xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures
R McGreevy, A Singharoy, Q Li, J Zhang, D Xu, E Perozo, K Schulten
Acta Crystallographica Section D: Biological Crystallography 70 (9), 2344-2355, 2014
372014
Charmm-gui mdff/xmdff utilizer for molecular dynamics flexible fitting simulations in various environments
Y Qi, J Lee, A Singharoy, R McGreevy, K Schulten, W Im
The Journal of Physical Chemistry B 121 (15), 3718-3723, 2017
112017
Constructing atomic structural models into cryo-EM densities using molecular dynamics–Pros and cons
Y Wang, M Shekhar, D Thifault, CJ Williams, R McGreevy, J Richardson, ...
Journal of structural biology 204 (2), 319-328, 2018
92018
NAMD User’s guide
R Bernardi, M Bhandarkar, A Bhatele, E Bohm, R Brunner, F Buelens, ...
Theoretical Biophysics Group: University of Illinois and Beck-man Institute 405, 2018
82018
Molecular Dynamics Flexible Fitting
M Developers, R McGreevy, KY Chan, LG Trabuco, E Villa
2019
Molecular dynamics-based refinement and validation for sub-5 cryo-electron microscopy maps
S Abhishek, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten
eLife 5, 2016
2016
Molecular dynamics-based model refinement and validation with Resolution Exchange MDFF for sub-5 cryo-electron microscopy maps: Supplementary file
A Singharoy, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten
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