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John C. Mu
John C. Mu
Research Engineer, Bina Technologies part of Roche Sequencing
Verified email at umnhoj.com - Homepage
Title
Cited by
Cited by
Year
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
3242018
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing
M Mohiyuddin, JC Mu, J Li, N Bani Asadi, MB Gerstein, A Abyzov, ...
Bioinformatics 31 (16), 2741-2744, 2015
1542015
An ensemble approach to accurately detect somatic mutations using SomaticSeq
LT Fang, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu, G Gibeling, ...
Genome biology 16, 1-13, 2015
1152015
Mutation of a U2 snRNA gene causes global disruption of alternative splicing and neurodegeneration
Y Jia, JC Mu, SL Ackerman
Cell 148 (1), 296-308, 2012
1142012
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications
JC Mu, M Mohiyuddin, J Li, N Bani Asadi, MB Gerstein, A Abyzov, ...
Bioinformatics 31 (9), 1469-1471, 2015
732015
Fast and accurate read alignment for resequencing
JC Mu, H Jiang, A Kiani, M Mohiyuddin, N Bani Asadi, WH Wong
Bioinformatics 28 (18), 2366-2373, 2012
732012
LongISLND: in silico sequencing of lengthy and noisy datatypes
B Lau, M Mohiyuddin, JC Mu, LT Fang, N Bani Asadi, C Dallett, HYK Lam
Bioinformatics 32 (24), 3829-3832, 2016
272016
Design of rate-compatible protograph-based LDPC codes with mixed circulants
Y Xie, JC Mu, J Yuan
2010 6th International Symposium on Turbo Codes & Iterative Information …, 2010
222010
Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods
JC Mu, P Tootoonchi Afshar, M Mohiyuddin, X Chen, J Li, N Bani Asadi, ...
Scientific reports 5 (1), 14493, 2015
172015
Computational aspects of optional Pólya tree
H Jiang, JC Mu, K Yang, C Du, L Lu, WH Wong
Journal of Computational and Graphical Statistics 25 (1), 301-320, 2016
122016
Exploring the physiologic role of human gastroesophageal reflux by analyzing time‐series data from 24‐h gastric and esophageal pH recordings
L Lu, JC Mu, S Sloan, PB Miner, JD Gardner
Physiological Reports 2 (e12051), 2014
62014
Global disruption of alternative splicing and neurodegeneration is caused by mutation of a U2 snRNA gene
Y Jia, JC Mu, SL Ackerman
Cell 148 (1-2), 296, 2012
12012
Abstract LB-306: An ensemble approach to accurately detect somatic mutations via adaptive boosting
LT Fang, PT Afshar, JC Mu, N Bani Asadi, WH Wong, HYK Lam
Cancer Research 75 (15_Supplement), LB-306-LB-306, 2015
2015
VarSim: A high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications SUPPLEMENTARY INFORMATION
JC Mu, M Mohiyuddin, J Li, NB Asadi, MB Gerstein, A Abyzov, WH Wong, ...
2014
Algorithms for the Alignment of Biological Sequences
JC Mu
Stanford University, 2014
2014
Supplementary Materials for Fast and Accurate Read Alignment for Resequencing
JC Mu, H Jiang, A Kiani, M Mohiyuddin, NB Asadi, WH Wong
MetaSV: An accurate integrative structural-variant caller for next generation sequencing SUPPLEMENTARY INFORMATION
M Mohiyuddin, JC Mu, J Li, NB Asadi, MB Gerstein, A Abyzov, WH Wong, ...
A comprehensive and accurate RNA-Seq pipeline using a hybrid sequencing and algorithm approach
PT Afshar, G Gibeling, R Sebra, M Mohiyuddin, JC Mu, H Tilgner, ...
STAR 372, 54.3, 0
Classification of RNA Splice Junctions Based on Genomic Signals
M Li, YS Long, J Mu
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