| Comprehensive molecular characterization of human colon and rectal cancer Cancer Genome Atlas Network Nature 487 (7407), 330, 2012 | 7772 | 2012 |
| Integrated genomic analyses of ovarian carcinoma Cancer Genome Atlas Research Network Nature 474 (7353), 609, 2011 | 7111 | 2011 |
| Comprehensive genomic characterization of squamous cell lung cancers Cancer Genome Atlas Research Network Nature 489 (7417), 519, 2012 | 3788 | 2012 |
| Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM CJ Vaske, SC Benz, JZ Sanborn, D Earl, C Szeto, J Zhu, D Haussler, ... Bioinformatics 26 (12), i237-i245, 2010 | 910 | 2010 |
| Voltage-Gated Na+ Channel SCN5A Is a Key Regulator of a Gene Transcriptional Network That Controls Colon Cancer Invasion CD House, CJ Vaske, AM Schwartz, V Obias, B Frank, T Luu, ... Cancer research 70 (17), 6957-6967, 2010 | 318 | 2010 |
| Transcriptional programming of normal and inflamed human epidermis at single-cell resolution JB Cheng, AJ Sedgewick, AI Finnegan, P Harirchian, J Lee, S Kwon, ... Cell reports 25 (4), 871-883, 2018 | 250 | 2018 |
| Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing MCW Lee, FJ Lopez-Diaz, SY Khan, MA Tariq, Y Dayn, CJ Vaske, ... Proceedings of the National Academy of Sciences 111 (44), E4726-E4735, 2014 | 223 | 2014 |
| Integrated molecular profiles of invasive breast tumors and ductal carcinoma in situ (DCIS) reveal differential vascular and interleukin signaling VN Kristensen, CJ Vaske, J Ursini-Siegel, P Van Loo, SH Nordgard, ... Proceedings of the National Academy of Sciences 109 (8), 2802-2807, 2012 | 206 | 2012 |
| JARID1B is a luminal lineage-driving oncogene in breast cancer S Yamamoto, Z Wu, HG Russnes, S Takagi, G Peluffo, C Vaske, X Zhao, ... Cancer cell 25 (6), 762-777, 2014 | 196 | 2014 |
| Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome MR Aure, V Vitelli, S Jernström, S Kumar, M Krohn, EU Due, TH Haukaas, ... Breast Cancer Research 19, 1-18, 2017 | 105 | 2017 |
| Method of providing a treatment to a subject based on a dynamic pathway map CJ Vaske, SC Benz, JM Stuart, D Haussler US Patent 10,770,169, 2020 | 98* | 2020 |
| A deep learning image-based intrinsic molecular subtype classifier of breast tumors reveals tumor heterogeneity that may affect survival MI Jaber, B Song, C Taylor, CJ Vaske, SC Benz, S Rabizadeh, ... Breast Cancer Research 22, 1-10, 2020 | 95 | 2020 |
| Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma JP North, J Golovato, CJ Vaske, JZ Sanborn, A Nguyen, W Wu, B Goode, ... Nature communications 9 (1), 1894, 2018 | 82 | 2018 |
| Lymphocyte Invasion in IC10/Basal-Like Breast Tumors Is Associated with Wild-Type TP53 D Quigley, L Silwal-Pandit, R Dannenfelser, A Langerød, HKM Vollan, ... Molecular Cancer Research 13 (3), 493-501, 2015 | 75 | 2015 |
| The UCSC cancer genomics browser: update 2011 JZ Sanborn, SC Benz, B Craft, C Szeto, KM Kober, L Meyer, CJ Vaske, ... Nucleic acids research 39 (suppl_1), D951-D959, 2011 | 74 | 2011 |
| Healthcare object recognition systems and methods P Soon-Shiong, JZ Sanborn, SC Benz, CJ Vaske US Patent 9,824,184, 2017 | 65 | 2017 |
| Gene prediction and verification in a compact genome with numerous small introns AE Tenney, RH Brown, C Vaske, JK Lodge, TL Doering, MR Brent Genome research 14 (11), 2330-2335, 2004 | 59 | 2004 |
| MDM2-Containing Double Minute Chromosomes And Methods Therefore JZ Sanborn, CJ Vaske, SC Benz US Patent App. 14/363,789, 2014 | 58 | 2014 |
| Learning subgroup-specific regulatory interactions and regulator independence with PARADIGM AJ Sedgewick, SC Benz, S Rabizadeh, P Soon-Shiong, CJ Vaske Bioinformatics 29 (13), i62-i70, 2013 | 47 | 2013 |
| A factor graph nested effects model to identify networks from genetic perturbations CJ Vaske, C House, T Luu, B Frank, CH Yeang, NH Lee, JM Stuart PLoS computational biology 5 (1), e1000274, 2009 | 46 | 2009 |
