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Jose M Duarte
Jose M Duarte
RCSB PDB, UC San Diego
Verified email at rcsb.org
Title
Cited by
Cited by
Year
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
University of Utah Weiss Robert B. 14 Dunn Diane M. 14, ...
Nature 428 (6982), 493-521, 2004
25552004
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology …
SK Burley, C Bhikadiya, C Bi, S Bittrich, L Chen, GV Crichlow, CH Christie, ...
Nucleic acids research 49 (D1), D437-D451, 2021
12372021
The RCSB protein data bank: integrative view of protein, gene and 3D structural information
PW Rose, A Prlić, A Altunkaya, C Bi, AR Bradley, CH Christie, ...
Nucleic acids research, gkw1000, 2016
10952016
RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy
SK Burley, HM Berman, C Bhikadiya, C Bi, L Chen, L Di Costanzo, ...
Nucleic acids research 47 (D1), D464-D474, 2019
10932019
Protein Data Bank: the single global archive for 3D macromolecular structure data
Nucleic acids research 47 (D1), D520-D528, 2019
7012019
Web-based molecular graphics for large complexes
AS Rose, AR Bradley, Y Valasatava, JM Duarte, A Prlić, PW Rose
Proceedings of the 21st international conference on Web3D technology, 185-186, 2016
6382016
RCSB Protein Data Bank: Enabling biomedical research and drug discovery
DS Goodsell, C Zardecki, L Di Costanzo, JM Duarte, BP Hudson, ...
Protein science 29 (1), 52-65, 2020
3062020
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education
SK Burley, HM Berman, C Christie, JM Duarte, Z Feng, J Westbrook, ...
Protein Science 27 (1), 316-330, 2018
2672018
Protein interface classification by evolutionary analysis
JM Duarte, A Srebniak, MA Schärer, G Capitani
BMC bioinformatics 13, 1-16, 2012
1612012
CMView: interactive contact map visualization and analysis
C Vehlow, H Stehr, M Winkelmann, JM Duarte, L Petzold, J Dinse, ...
Bioinformatics 27 (11), 1573-1574, 2011
1592011
RCSB Protein Data Bank: architectural advances towards integrated searching and efficient access to macromolecular structure data from the PDB archive
Y Rose, JM Duarte, R Lowe, J Segura, C Bi, C Bhikadiya, L Chen, ...
Journal of molecular biology 433 (11), 166704, 2021
1552021
Optimal contact definition for reconstruction of contact maps
JM Duarte, R Sathyapriya, H Stehr, I Filippis, M Lappe
BMC bioinformatics 11, 1-10, 2010
762010
Automated evaluation of quaternary structures from protein crystals
S Bliven, A Lafita, A Parker, G Capitani, JM Duarte
PLoS computational biology 14 (4), e1006104, 2018
752018
The structural impact of cancer-associated missense mutations in oncogenes and tumor suppressors
H Stehr, SHJ Jang, JM Duarte, C Wierling, H Lehrach, M Lappe, ...
Molecular cancer 10, 1-10, 2011
732011
A PDB-wide, evolution-based assessment of protein-protein interfaces
K Baskaran, JM Duarte, N Biyani, S Bliven, G Capitani
BMC structural biology 14, 1-11, 2014
662014
Assessment of protein assembly prediction in CASP12
A Lafita, S Bliven, A Kryshtafovych, M Bertoni, B Monastyrskyy, JM Duarte, ...
Proteins: Structure, Function, and Bioinformatics 86, 247-256, 2018
622018
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
G Glusman, PW Rose, A Prlić, J Dougherty, JM Duarte, AS Hoffman, ...
Genome medicine 9, 1-10, 2017
612017
Defining an essence of structure determining residue contacts in proteins
R Sathyapriya, JM Duarte, H Stehr, I Filippis, M Lappe
PLoS computational biology 5 (12), e1000584, 2009
552009
MMTF—an efficient file format for the transmission, visualization, and analysis of macromolecular structures
AR Bradley, AS Rose, A Pavelka, Y Valasatava, JM Duarte, A Prlić, ...
PLoS computational biology 13 (6), e1005575, 2017
512017
Real time structural search of the Protein Data Bank
D Guzenko, SK Burley, JM Duarte
PLoS computational biology 16 (7), e1007970, 2020
482020
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