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Dokyoon Kim
Dokyoon Kim
Associate Professor of Informatics at University of Pennsylvania
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Methods of integrating data to uncover genotype–phenotype interactions
MD Ritchie, ER Holzinger, R Li, SA Pendergrass, D Kim
Nature Reviews Genetics 16 (2), 85-97, 2015
11572015
Predicting Alzheimer¡¯s disease progression using multi-modal deep learning approach
G Lee, K Nho, B Kang, KA Sohn, D Kim
Scientific reports 9 (1), 1952, 2019
4582019
Robust predictive model for evaluating breast cancer survivability
K Park, A Ali, D Kim, Y An, M Kim, H Shin
Engineering Applications of Artificial Intelligence 26 (9), 2194-2205, 2013
2092013
Synergistic effect of different levels of genomic data for cancer clinical outcome prediction
D Kim, H Shin, YS Song, JH Kim
Journal of biomedical informatics 45 (6), 1191-1198, 2012
1182012
Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction
D Kim, JG Joung, KA Sohn, H Shin, YR Park, MD Ritchie, JH Kim
Journal of the American Medical Informatics Association 22 (1), 109-120, 2015
1162015
ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network
D Kim, R Li, SM Dudek, MD Ritchie
BioData mining 6, 1-14, 2013
952013
Identification of epigenetic interactions between miRNA and DNA methylation associated with gene expression as potential prognostic markers in bladder cancer
M Shivakumar, Y Lee, L Bang, T Garg, KA Sohn, D Kim
BMC medical genomics 10, 65-75, 2017
682017
Human-Disease Phenotype Map Derived from PheWAS across 38,682 Individuals
A Verma, L Bang, JE Miller, Y Zhang, MTM Lee, Y Zhang, ...
The American Journal of Human Genetics, 2019
612019
Min-redundancy and max-relevance multi-view feature selection for predicting ovarian cancer survival using multi-omics data
Y EL-Manzalawy, TY Hsieh, M Shivakumar, D Kim, V Honavar
BMC Medical Genomics 11 (Suppl 3), 71, 2018
602018
Why is the electronic health record so challenging for research and clinical care?
JH Holmes, J Beinlich, MR Boland, KH Bowles, Y Chen, TS Cook, ...
Methods of information in medicine 60 (01/02), 032-048, 2021
582021
MildInt: deep learning-based multimodal longitudinal data integration framework
G Lee, B Kang, K Nho, KA Sohn, D Kim
Frontiers in genetics 10, 617, 2019
582019
Using knowledge-driven genomic interactions for multi-omics data analysis: metadimensional models for predicting clinical outcomes in ovarian carcinoma
D Kim, R Li, A Lucas, SS Verma, SM Dudek, MD Ritchie
Journal of the American Medical Informatics Association 24 (3), 577-587, 2017
542017
The joint effect of air pollution exposure and copy number variation on risk for autism
D Kim, H Volk, S Girirajan, S Pendergrass, MA Hall, SS Verma, ...
Autism Research 10 (9), 1470-1480, 2017
522017
Predicting censored survival data based on the interactions between meta-dimensional omics data in breast cancer
D Kim, R Li, SM Dudek, MD Ritchie
Journal of biomedical informatics 56, 220-228, 2015
422015
Preparing next-generation scientists for biomedical big data: artificial intelligence approaches
JH Moore, MR Boland, PG Camara, H Chervitz, G Gonzalez, BE Himes, ...
Personalized medicine 16 (3), 247-257, 2019
402019
Liver imaging features by convolutional neural network to predict the metachronous liver metastasis in stage I-III colorectal cancer patients based on preoperative abdominal CT ¡¦
S Lee, EK Choe, SY Kim, HS Kim, KJ Park, D Kim
BMC bioinformatics 21, 1-14, 2020
372020
Incorporating inter-relationships between different levels of genomic data into cancer clinical outcome prediction
D Kim, H Shin, KA Sohn, A Verma, MD Ritchie, JH Kim
Methods 67 (3), 344-353, 2014
372014
Association analysis of rare variants near the APOE region with CSF and neuroimaging biomarkers of Alzheimer¡¯s disease
K Nho, S Kim, E Horgusluoglu, SL Risacher, L Shen, D Kim, S Lee, ...
BMC medical genomics 10, 45-52, 2017
362017
Long-term cardiovascular outcomes of gestational diabetes mellitus: a prospective UK Biobank study
SM Lee, M Shivakumar, JW Park, YM Jung, EK Choe, SH Kwak, S Oh, ...
Cardiovascular Diabetology 21 (1), 221, 2022
352022
Ideas for how informaticians can get involved with COVID-19 research
JH Moore, I Barnett, MR Boland, Y Chen, G Demiris, ...
BioData mining 13, 1-16, 2020
342020
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