Contact tracing mobile apps for COVID-19: Privacy considerations and related trade-offs H Cho, D Ippolito, YW Yu arXiv preprint arXiv:2003.11511, 2020 | 633 | 2020 |
The need for privacy with public digital contact tracing during the COVID-19 pandemic Y Bengio, R Janda, YW Yu, D Ippolito, M Jarvie, D Pilat, B Struck, ... The Lancet Digital Health 2 (7), e342-e344, 2020 | 175 | 2020 |
Identification of endogenous acyl amino acids based on a targeted lipidomics approach B Tan, DK O’Dell, YW Yu, MF Monn, HV Hughes, S Burstein, JM Walker Journal of lipid research 51 (1), 112-119, 2010 | 144 | 2010 |
Levenshtein distance, sequence comparison and biological database search B Berger, MS Waterman, YW Yu IEEE transactions on information theory 67 (6), 3287-3294, 2020 | 133 | 2020 |
Quality score compression improves genotyping accuracy YW Yu, D Yorukoglu, J Peng, B Berger Nature biotechnology 33 (3), 240, 2015 | 79 | 2015 |
Computational biology in the 21st century: Scaling with compressive algorithms B Berger, NM Daniels, YW Yu Communications of the ACM 59 (8), 72-80, 2016 | 73 | 2016 |
Targeted lipidomics: discovery of new fatty acyl amides B Tan, HB Bradshaw, N Rimmerman, H Srinivasan, YW Yu, JF Krey, ... The AAPS journal 8, E461-E465, 2006 | 71 | 2006 |
Entropy-scaling search of massive biological data YW Yu, NM Daniels, DC Danko, B Berger Cell systems 1 (2), 130-140, 2015 | 66 | 2015 |
Fast genotyping of known SNPs through approximate k-mer matching A Shajii, D Yorukoglu, Y William Yu, B Berger Bioinformatics 32 (17), i538-i544, 2016 | 65 | 2016 |
Fast and robust metagenomic sequence comparison through sparse chaining with skani J Shaw, YW Yu Nature Methods 20 (11), 1661-1665, 2023 | 62 | 2023 |
Inherent privacy limitations of decentralized contact tracing apps Y Bengio, D Ippolito, R Janda, M Jarvie, B Prud'homme, JF Rousseau, ... Journal of the American Medical Informatics Association 28 (1), 193-195, 2021 | 57 | 2021 |
Covi white paper H Alsdurf, E Belliveau, Y Bengio, T Deleu, P Gupta, D Ippolito, R Janda, ... arXiv preprint arXiv:2005.08502, 2020 | 52 | 2020 |
Compressive mapping for next-generation sequencing D Yorukoglu, YW Yu, J Peng, B Berger Nature biotechnology 34 (4), 374-376, 2016 | 46 | 2016 |
Theory of local k-mer selection with applications to long-read alignment J Shaw, YW Yu Bioinformatics 38 (20), 4659-4669, 2022 | 43 | 2022 |
Metagenomic binning through low-density hashing Y Luo, YW Yu, J Zeng, B Berger, J Peng Bioinformatics 35 (2), 219-226, 2019 | 43 | 2019 |
Targeted lipidomics approach for endogenous N-acyl amino acids in rat brain tissue B Tan, YW Yu, MF Monn, HV Hughes, DK O’Dell, JM Walker Journal of Chromatography B 877 (26), 2890-2894, 2009 | 38 | 2009 |
Hyperminhash: Minhash in loglog space YW Yu, GM Weber IEEE Transactions on Knowledge and Data Engineering 34 (1), 328-339, 2022 | 34* | 2022 |
Navigating bottlenecks and trade-offs in genomic data analysis B Berger, YW Yu Nature Reviews Genetics 24 (4), 235-250, 2023 | 31 | 2023 |
Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification YW Yu, D Yorukoglu, B Berger International Conference on Research in Computational Molecular Biology, 385-399, 2014 | 30 | 2014 |
Carnelian uncovers hidden functional patterns across diverse study populations from whole metagenome sequencing reads S Nazeen, YW Yu, B Berger Genome biology 21, 1-18, 2020 | 21 | 2020 |