Chris Whidden
Chris Whidden
Assistant Professor, Faculty of Computer Science, Dalhousie University
Verified email at - Homepage
Cited by
Cited by
Interactions in the microbiome: communities of organisms and communities of genes
E Boon, CJ Meehan, C Whidden, DHJ Wong, MGI Langille, RG Beiko
FEMS microbiology reviews 38 (1), 90-118, 2014
Quantifying MCMC Exploration of Phylogenetic Tree Space
C Whidden, FA Matsen IV
Systematic Biology 64 (3), 472-491, 2015
Fixed-parameter algorithms for maximum agreement forests
C Whidden, RG Beiko, N Zeh
SIAM Journal on Computing 42 (4), 1431-1466, 2013
Supertrees based on the subtree prune-and-regraft distance
C Whidden, N Zeh, RG Beiko
Systematic Biology 63 (4), 566-581, 2014
Automated detection, classification and counting of fish in fish passages with deep learning
V Kandimalla, M Richard, F Smith, J Quirion, L Torgo, C Whidden
Frontiers in Marine Science 8, 823173, 2022
A unifying view on approximation and FPT of agreement forests
C Whidden, N Zeh
International Workshop on Algorithms in Bioinformatics, 390-402, 2009
Fast FPT algorithms for computing rooted agreement forests: theory and experiments
C Whidden, RG Beiko, N Zeh
Experimental Algorithms: 9th International Symposium, SEA 2010, Ischia …, 2010
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology
M Fourment, AF Magee, C Whidden, A Bilge, FA Matsen IV, VN Minin
Systematic biology 69 (2), 209-220, 2020
Ricci–Ollivier curvature of the rooted phylogenetic subtree–prune–regraft graph
C Whidden, FA Matsen IV
Theoretical Computer Science 699, 1-20, 2017
Calculating the unrooted subtree prune-and-regraft distance
C Whidden, FA Matsen
IEEE/ACM transactions on computational biology and bioinformatics 16 (3 …, 2018
Fixed-parameter and approximation algorithms for maximum agreement forests
C Whidden, RG Beiko, N Zeh
arXiv preprint arXiv:1108.2664, 2011
Fixed-Parameter and Approximation Algorithms for Maximum Agreement Forests of Multifurcating Trees
C Whidden, RG Beiko, N Zeh
Algorithmica, 2015
The combinatorics of discrete time-trees: theory and open problems
A Gavryushkin, C Whidden, FA Matsen IV
Journal of mathematical biology 76 (5), 1101-1121, 2018
Hybridization number on three rooted binary trees is EPT
L Van Iersel, S Kelk, N Lekic, C Whidden, N Zeh
SIAM Journal on Discrete Mathematics 30 (3), 1607-1631, 2016
Systematic exploration of the high likelihood set of phylogenetic tree topologies
C Whidden, BC Claywell, T Fisher, AF Magee, M Fourment, FA Matsen IV
Systematic Biology 69 (2), 280-293, 2020
Efficiently inferring pairwise subtree prune-and-regraft adjacencies between phylogenetic trees
C Whidden, FA Matsen IV
2018 Proceedings of the Fifteenth Workshop on Analytic Algorithmics and …, 2018
DalTREC 2005 QA System Jellyfish: Mark-and-Match Approach to Question Answering.
T Abou-Assaleh, N Cercone, J Doyle, V Keselj, C Whidden
TREC, 2005
Echofilter: A Deep Learning Segmentation Model Improves the Automation, Standardization, and Timeliness for Post-Processing Echosounder Data in Tidal Energy Streams
SC Lowe, LP McGarry, J Douglas, J Newport, S Oore, C Whidden, ...
Front. Mar. Sci. 9, 2022
A machine learning redundancy model for the Herring Cove smart buoy
JW Fasuyi, J Newport, C Whidden
Journal of Ocean Technology 15 (3), 2020
Finding optimal parameters for edit distance based sequence classification is NP-hard
V Kešelj, H Liu, N Zeh, C Blouin, C Whidden
Proceedings of the KDD-09 Workshop on Statistical and Relational Learning in …, 2009
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