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Mikaela Koutrouli
Mikaela Koutrouli
Novo Nordisk Foundation Center for Protein Research
Verified email at cpr.ku.dk
Title
Cited by
Cited by
Year
The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...
Nucleic Acids Research 51 (D1), D638-D646, 2023
11092023
A guide to conquer the biological network era using graph theory
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos
Frontiers in bioengineering and biotechnology 8, 34, 2020
2042020
The scverse project provides a computational ecosystem for single-cell omics data analysis
I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ...
Nature biotechnology 41 (5), 604-606, 2023
552023
The STRING database in 2023: Protein-protein association networks and functional enrichment analyses for any sequenced genome of interest., 2023, 51, pp
D Szklarczyk, R Kirsch, M Koutrouli, K Nastou, F Mehryary, R Hachilif, ...
D638-D646. DOI: https://doi. org/10.1093/nar/gkac1000, 0
27
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review
FA Baltoumas, S Zafeiropoulou, E Karatzas, M Koutrouli, F Thanati, ...
Biomolecules 11 (8), 1245, 2021
152021
NORMA: the network makeup artist—a web tool for network annotation visualization
M Koutrouli, E Karatzas, K Papanikolopoulou, GA Pavlopoulos
Genomics, Proteomics and Bioinformatics 20 (3), 578-586, 2022
92022
Exploring Networks in the STRING and Reactome Database
M Koutrouli, P Hatzis, GA Pavlopoulos
Academic Press, 2021
92021
A Guide to Conquer the Biological Network Era Using Graph Theory. Front Bioeng Biotechnol 2020; 8: 34
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos
62020
FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data
M Koutrouli, K Nastou, P Piera Líndez, R Bouwmeester, S Rasmussen, ...
Bioinformatics 40 (2), btae010, 2024
52024
Systems Medicine
M Koutrouli, P Hatzis, GA Pavlopoulos
52021
The network makeup artist (NORMA-2.0): Distinguishing annotated groups in a network using innovative layout strategies
E Karatzas, M Koutrouli, FA Baltoumas, K Papanikolopoulou, ...
Bioinformatics Advances 2 (1), vbac036, 2022
42022
The Network Analysis Profiler (NAP v2. 0): A web tool for visual topological comparison between multiple networks
M Koutrouli, T Theodosiou, I Iliopoulos, G Pavlopoulos
EMBnet.journal 26, e943, 2021
32021
U-CIE [/juː'siː/]: Color encoding of high-dimensional data
M Koutrouli, JH Morris, LJ Jensen
22021
Corrigendum: A guide to conquer the biological network era using graph theory
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos
Frontiers in Bioengineering and Biotechnology 11, 2023
12023
Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip
X Ding, K Hoff, R Swaminathan, S Pollom, T Huang, X Li, G Zhou, Z Bai, ...
bioRxiv, 2024.01. 08.574734, 2024
2024
Spatial Transcriptomics Sequencing of Mouse Liver at 2 Micron Resolution Using a Novel Spatial DNA Chip
X Ding, K Hoff, R Swaminathan, S Pollom, T Huang, X Li, G Zhou, Z Bai, ...
2024
Improving dictionary-based named entity recognition with deep learning
K Nastou, M Koutrouli, S Pyysalo, LJ Jensen
bioRxiv, 2023.12. 10.570777, 2023
2023
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