| Exome-based analysis for RNA epigenome sequencing data J Meng, X Cui, MK Rao, Y Chen, Y Huang Bioinformatics 29 (12), 1565-1567, 2013 | 155 | 2013 |
| Viral and cellular N6-methyladenosine and N6,2′-O-dimethyladenosine epitranscriptomes in the KSHV life cycle B Tan, H Liu, S Zhang, SR Da Silva, L Zhang, J Meng, X Cui, H Yuan, ... Nature microbiology 3 (1), 108-120, 2018 | 154 | 2018 |
| Guitar: an R/Bioconductor package for gene annotation guided transcriptomic analysis of RNA-related genomic features X Cui, Z Wei, L Zhang, H Liu, L Sun, SW Zhang, Y Huang, J Meng BioMed research international 2016, 2016 | 108 | 2016 |
| KSHV microRNAs mediate cellular transformation and tumorigenesis by redundantly targeting cell growth and survival pathways R Moody, Y Zhu, Y Huang, X Cui, T Jones, R Bedolla, X Lei, Z Bai, SJ Gao PLoS pathogens 9 (12), e1003857, 2013 | 106 | 2013 |
| A novel algorithm for calling mRNA m 6 A peaks by modeling biological variances in MeRIP-seq data X Cui, J Meng, S Zhang, Y Chen, Y Huang Bioinformatics 32 (12), i378-i385, 2016 | 86 | 2016 |
| MeTDiff: a novel differential RNA methylation analysis for MeRIP-Seq data X Cui, L Zhang, J Meng, MK Rao, Y Chen, Y Huang IEEE/ACM transactions on computational biology and bioinformatics 15 (2 …, 2015 | 82 | 2015 |
| Multimodal fake news detection through data augmentation-based contrastive learning J Hua, X Cui, X Li, K Tang, P Zhu Applied Soft Computing 136, 110125, 2023 | 32 | 2023 |
| A hierarchical model for clustering m6A methylation peaks in MeRIP-seq data X Cui, J Meng, S Zhang, MK Rao, Y Chen, Y Huang Bmc Genomics 17, 317-325, 2016 | 19 | 2016 |
| HEPeak: an HMM-based exome peak-finding package for RNA epigenome sequencing data X Cui, J Meng, MK Rao, Y Chen, Y Huang BMC genomics 16, 1-10, 2015 | 17 | 2015 |
| Investigation of stock price network based on time series analysis and complex network X Cui, J Hu, Y Ma, P Wu, P Zhu, HJ Li International Journal of Modern Physics B 35 (13), 2150171, 2021 | 15 | 2021 |
| Spatially enhanced differential RNA methylation analysis from affinity-based sequencing data with hidden Markov model YC Zhang, SW Zhang, L Liu, H Liu, L Zhang, X Cui, Y Huang, J Meng BioMed research international 2015, 2015 | 15 | 2015 |
| Viral and cellular N6-methyladenosine and N6, 2’-O-dimethyladenosine epitranscriptomes in the KSHV life cycle. Nat Microbiol 3: 108–120 B Tan, H Liu, S Zhang, SR Da Silva, L Zhang, J Meng, X Cui, H Yuan, ... | 14 | 2018 |
| Unveiling the dynamics in RNA epigenetic regulations J Meng, X Cui, H Liu, L Zhang, S Zhang, MK Rao, Y Chen, Y Huang 2013 IEEE International Conference on Bioinformatics and Biomedicine, 139-144, 2013 | 11 | 2013 |
| The effects of heterogeneity of updating rules on cooperation in spatial network T You, P Wang, D Jia, F Yang, X Cui, C Liu Applied Mathematics and Computation 372, 124959, 2020 | 4 | 2020 |
| HEP: An HMM-based exome peak-finding package for RNA epigenome sequencing data JM Xiaodong Cui, MK Rao, Y Chen, Y Huang BMC Genomics, 2014 | 4 | 2014 |
| Time series classification by Euclidean distance-based visibility graph L Cheng, P Zhu, W Sun, Z Han, K Tang, X Cui Physica A: Statistical Mechanics and its Applications 625, 129010, 2023 | 3 | 2023 |
| Self-attention enabled deep learning of dihydrouridine (D) modification on mRNAs unveiled a distinct sequence signature from tRNAs Y Wang, X Wang, X Cui, J Meng, R Rong Molecular Therapy-Nucleic Acids 31, 411-420, 2023 | 3 | 2023 |
| HEPT Attack: Heuristic Perpendicular Trial for Hard-label Attacks under Limited Query Budgets Q Li, X Li, X Cui, K Tang, P Zhu Proceedings of the 32nd ACM International Conference on Information and …, 2023 | 2 | 2023 |
| Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test L Zhang, J Meng, H Liu, X Cui, SW Zhang, Y Chen, Y Huang 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP …, 2014 | 2 | 2014 |
| Correction: KSHV MicroRNAs Mediate Cellular Transformation and Tumorigenesis by Redundantly Targeting Cell Growth and Survival Pathways R Moody, Y Zhu, Y Huang, X Cui, T Jones, R Bedolla, X Lei, Z Bai, SJ Gao PLoS Pathogens 10 (1), 2014 | 2 | 2014 |
