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Anna Vangone
Anna Vangone
Large Molecule Research - Roche
Verified email at uu.nl
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Cited by
Year
PRODIGY: a web server for predicting the binding affinity of protein–protein complexes
LC Xue, JP Rodrigues, PL Kastritis, AM Bonvin, A Vangone
Bioinformatics 32 (23), 3676-3678, 2016
8782016
Contacts-based prediction of binding affinity in protein–protein complexes
A Vangone, AMJJ Bonvin
elife 4, e07454, 2015
4462015
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
4222015
COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes
A Vangone, R Spinelli, V Scarano, L Cavallo, R Oliva
Bioinformatics 27 (20), 2915-2916, 2011
2772011
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1642016
Large-scale prediction of binding affinity in protein–small ligand complexes: The PRODIGY-LIG web server
A Vangone, J Schaarschmidt, P Koukos, C Geng, N Citro, ME Trellet, ...
Bioinformatics 35 (9), 1585-1587, 2019
1452019
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2
Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ...
Journal of computer-aided molecular design 32, 175-185, 2018
1142018
iSEE: Interface structure, evolution, and energy‐based machine learning predictor of binding affinity changes upon mutations
C Geng, A Vangone, GE Folkers, LC Xue, AMJJ Bonvin
Proteins: Structure, Function, and Bioinformatics 87 (2), 110-119, 2019
732019
PRODIGY: a contact-based predictor of binding affinity in protein-protein complexes
A Vangone, AMJJ Bonvin
Bio-protocol 7 (3), e2124-e2124, 2017
592017
Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1
A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017
542017
CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts
E Chermak, A Petta, L Serra, A Vangone, V Scarano, L Cavallo, R Oliva
Bioinformatics 31 (9), 1481-1483, 2015
432015
Ranking multiple docking solutions based on the conservation of inter‐residue contacts
R Oliva, A Vangone, L Cavallo
Proteins: Structure, Function, and Bioinformatics 81 (9), 1571-1584, 2013
432013
MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectories
S Abdel-Azeim, E Chermak, A Vangone, R Oliva, L Cavallo
BMC bioinformatics 15, 1-11, 2014
372014
CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions
A Vangone, R Oliva, L Cavallo
Bmc Bioinformatics 13, 1-9, 2012
362012
Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes
C Geng, A Vangone, AMJJ Bonvin
Protein Engineering, Design and Selection 29 (8), 291-299, 2016
292016
Using a consensus approach based on the conservation of inter‐residue contacts to rank CAPRI models
A Vangone, L Cavallo, R Oliva
Proteins: Structure, Function, and Bioinformatics 81 (12), 2210-2220, 2013
282013
PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes
B Jiménez-García, K Elez, PI Koukos, AM Bonvin, A Vangone
Bioinformatics 35 (22), 4821-4823, 2019
262019
Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification
K Elez, AMJJ Bonvin, A Vangone
BMC bioinformatics 19, 19-28, 2018
252018
Structural basis for mutations of human aquaporins associated to genetic diseases
L Calvanese, G D’Auria, A Vangone, L Falcigno, R Oliva
International Journal of Molecular Sciences 19 (6), 1577, 2018
212018
D936Y and other mutations in the fusion core of the SARS-CoV-2 spike protein heptad repeat 1: frequency, geographical distribution, and structural effect
R Oliva, AR Shaikh, A Petta, A Vangone, L Cavallo
Molecules 26 (9), 2622, 2021
192021
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Articles 1–20