Nathan E Lewis
Nathan E Lewis
ucsd.edu의 이메일 확인됨 - 홈페이지
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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature protocols 6 (9), 1290, 2011
12922011
The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line
X Xu*, H Nagarajan*, NE Lewis*, S Pan*, Z Cai*, X Liu, W Chen, M Xie, ...
Nature biotechnology 29 (8), 735, 2011
6522011
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods
NE Lewis, H Nagarajan, BO Palsson
Nature Reviews Microbiology 10 (4), 291-305, 2012
6332012
Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models
NE Lewis, KK Hixson, TM Conrad, JA Lerman, P Charusanti, AD Polpitiya, ...
Molecular systems biology 6 (1), 2010
4182010
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
ZA King, J Lu, A Dräger, P Miller, S Federowicz, JA Lerman, A Ebrahim, ...
Nucleic acids research 44 (D1), D515-D522, 2016
3472016
Design and analysis of synthetic carbon fixation pathways
A Bar-Even, E Noor, NE Lewis, R Milo
Proceedings of the National Academy of Sciences 107 (19), 8889-8894, 2010
3182010
Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome
NE Lewis*, X Liu*, Y Li*, H Nagarajan*, G Yerganian, E O'brien, ...
Nature biotechnology 31 (8), 759, 2013
3002013
Microbial laboratory evolution in the era of genome‐scale science
TM Conrad, NE Lewis, BØ Palsson
Molecular systems biology 7 (1), 2011
2482011
Large-scale in silico modeling of metabolic interactions between cell types in the human brain
NE Lewis, G Schramm, A Bordbar, J Schellenberger, MP Andersen, ...
Nature biotechnology 28 (12), 1279, 2010
2342010
Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
A Bordbar, NE Lewis, J Schellenberger, BØ Palsson, N Jamshidi
Molecular systems biology 6 (1), 2010
2292010
Network context and selection in the evolution to enzyme specificity
H Nam*, NE Lewis*, JA Lerman, DH Lee, RL Chang, D Kim, BO Palsson
Science 337 (6098), 1101-1104, 2012
2162012
The role of replicates for error mitigation in next-generation sequencing
K Robasky*, NE Lewis*, GM Church
Nature Reviews Genetics 15 (1), 56, 2014
2152014
In silico method for modelling metabolism and gene product expression at genome scale
JA Lerman, DR Hyduke, H Latif, VA Portnoy, NE Lewis, JD Orth, ...
Nature communications 3 (1), 1-10, 2012
2152012
Elimination of thermodynamically infeasible loops in steady-state metabolic models
J Schellenberger, NE Lewis, BØ Palsson
Biophysical journal 100 (3), 544-553, 2011
1742011
Recon 2.2: from reconstruction to model of human metabolism
N Swainston, K Smallbone, H Hefzi, PD Dobson, J Brewer, M Hanscho, ...
Metabolomics 12 (7), 109, 2016
1652016
Combinatorial CRISPR–Cas9 screens for de novo mapping of genetic interactions
JP Shen, D Zhao, R Sasik, J Luebeck, A Birmingham, ...
Nature methods 14 (6), 573, 2017
1612017
Analysis of low-abundance, low-molecular-weight serum proteins using mass spectrometry
K Merrell, K Southwick, SW Graves, MS Esplin, NE Lewis, CD Thulin
Journal of biomolecular techniques: JBT 15 (4), 238, 2004
1602004
Analysis of omics data with genome-scale models of metabolism
DR Hyduke, NE Lewis, BØ Palsson
Molecular BioSystems 9 (2), 167-174, 2013
1572013
RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media
TM Conrad, M Frazier, AR Joyce, BK Cho, EM Knight, NE Lewis, ...
Proceedings of the National Academy of Sciences 107 (47), 20500-20505, 2010
1522010
Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways
ZA King, A Dräger, A Ebrahim, N Sonnenschein, NE Lewis, BO Palsson
PLoS computational biology 11 (8), 2015
1502015
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