Ralf Zimmer
Ralf Zimmer
Professor für Informatik, LMU München
Verified email at - Homepage
Cited by
Cited by
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
Wisdom of crowds for robust gene network inference
GS Daniel Marbach, James C Costello, Robert Küffner, Nicole M Vega, Robert J ...
Nature Methods 9 (2012), 796-804, 0
RelEx—Relation extraction using dependency parse trees
K Fundel, R Küffner, R Zimmer
Bioinformatics 23 (3), 365-371, 2007
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
L Dölken, Z Ruzsics, B Rädle, CC Friedel, R Zimmer, J Mages, ...
Rna 14 (9), 1959-1972, 2008
The SARS-coronavirus-host interactome: identification of cyclophilins as target for pan-coronavirus inhibitors
S Pfefferle, J Schöpf, M Kögl, CC Friedel, MA Müller, J Carbajo-Lozoya, ...
PLoS pathogens 7 (10), e1002331, 2011
Co-clustering of biological networks and gene expression data
D Hanisch, A Zien, R Zimmer, T Lengauer
Bioinformatics 18 (suppl_1), S145-S154, 2002
Large‐scale gene expression profiling reveals major pathogenetic pathways of cartilage degeneration in osteoarthritis
T Aigner, K Fundel, J Saas, PM Gebhard, J Haag, T Weiss, A Zien, ...
Arthritis & Rheumatism: Official Journal of the American College of …, 2006
ProMiner: rule-based protein and gene entity recognition
D Hanisch, K Fundel, HT Mevissen, R Zimmer, J Fluck
BMC bioinformatics 6, 1-9, 2005
Conserved principles of mammalian transcriptional regulation revealed by RNA half-life
CC Friedel, L Dölken, Z Ruzsics, UH Koszinowski, R Zimmer
Nucleic acids research 37 (17), e115-e115, 2009
Widespread disruption of host transcription termination in HSV-1 infection
AJ Rutkowski, F Erhard, A L’Hernault, T Bonfert, M Schilhabel, C Crump, ...
Nature communications 6 (1), 7126, 2015
Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome
A von Brunn, C Teepe, JC Simpson, R Pepperkok, CC Friedel, R Zimmer, ...
PloS one 2 (5), e459, 2007
Systematic analysis of viral and cellular microRNA targets in cells latently infected with human γ-herpesviruses by RISC immunoprecipitation assay
L Dölken, G Malterer, F Erhard, S Kothe, CC Friedel, G Suffert, ...
Cell host & microbe 7 (4), 324-334, 2010
Evolutionarily conserved herpesviral protein interaction networks
E Fossum, CC Friedel, SV Rajagopala, B Titz, A Baiker, T Schmidt, ...
PLoS pathogens 5 (9), e1000570, 2009
Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer
W Fischer, L Windhager, S Rohrer, M Zeiller, A Karnholz, R Hoffmann, ...
Nucleic acids research 38 (18), 6089-6101, 2010
Degradation of Cellular miR-27 by a Novel, Highly Abundant Viral Transcript Is Important for Efficient Virus Replication In Vivo
L Marcinowski, M Tanguy, A Krmpotic, B Rädle, VJ Lisnić, L Tuddenham, ...
PLoS pathogens 8 (2), e1002510, 2012
Resolving lipid mediators maresin 1 and resolvin D2 prevent atheroprogression in mice
JR Viola, P Lemnitzer, Y Jansen, G Csaba, C Winter, C Neideck, ...
Circulation research 119 (9), 1030-1038, 2016
Fast protein fold recognition via sequence to structure alignment and contact capacity potentials
NN Alexandrov, R Nussinov, RM Zimmer
Pac. Symp. Biocomput 96, 53-72, 1996
Pathway analysis in metabolic databases via differential metabolic display (DMD)
R Küffner, R Zimmer, T Lengauer
Bioinformatics 16 (9), 825-836, 2000
Playing biology's name game: identifying protein names in scientific text
D Hanisch, J Fluck, HT Mevissen, R Zimmer
Biocomputing 2003, 403-414, 2002
Improved Ribo-seq enables identification of cryptic translation events
F Erhard, A Halenius, C Zimmermann, A L'Hernault, DJ Kowalewski, ...
Nature methods 15 (5), 363-366, 2018
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