Bernhard Palsson
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What is flux balance analysis?
JD Orth, I Thiele, BØ Palsson
Nature biotechnology 28 (3), 245-248, 2010
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
Escherichia coli and Salmonella typhimurium. Cellular and molecular biology. Volumes I and II.
FC Neidhardt, JL Ingraham, KB Low, B Magasanik, M Schaechter, ...
A protocol for generating a high-quality genome-scale metabolic reconstruction
I Thiele, BØ Palsson
Nature protocols 5 (1), 93-121, 2010
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ...
Molecular systems biology 3 (1), 121, 2007
Global reconstruction of the human metabolic network based on genomic and bibliomic data
NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ...
Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0
J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ...
Nature protocols 6 (9), 1290-1307, 2011
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
J Förster, I Famili, P Fu, BØ Palsson, J Nielsen
Genome research 13 (2), 244-253, 2003
Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
A Varma, BO Palsson
Applied and environmental microbiology 60 (10), 3724-3731, 1994
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
JL Reed, TD Vo, CH Schilling, BO Palsson
Genome biology 4 (9), 1-12, 2003
Genome-scale models of microbial cells: evaluating the consequences of constraints
ND Price, JL Reed, BØ Palsson
Nature Reviews Microbiology 2 (11), 886-897, 2004
A comprehensive genome‐scale reconstruction of Escherichia coli metabolism—2011
JD Orth, TM Conrad, J Na, JA Lerman, H Nam, AM Feist, BØ Palsson
Molecular systems biology 7 (1), 535, 2011
In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
JS Edwards, RU Ibarra, BO Palsson
Nature biotechnology 19 (2), 125-130, 2001
The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
JS Edwards, BO Palsson
Proceedings of the National Academy of Sciences 97 (10), 5528-5533, 2000
Metabolic flux balancing: basic concepts, scientific and practical use
A Varma, BO Palsson
Bio/technology 12 (10), 994-998, 1994
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
Systems biology: properties of reconstructed networks
BØ Palsson
Cambridge university press, 2006
COBRApy: constraints-based reconstruction and analysis for python
A Ebrahim, JA Lerman, BO Palsson, DR Hyduke
BMC systems biology 7, 1-6, 2013
Reconstruction of biochemical networks in microorganisms
AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson
Nature Reviews Microbiology 7 (2), 129-143, 2009
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
RU Ibarra, JS Edwards, BO Palsson
Nature 420 (6912), 186-189, 2002
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