Debsindhu Bhowmik
ProtTrans: towards cracking the language of Life's code through self-supervised deep learning and high performance computing
A Elnaggar, M Heinzinger, C Dallago, G Rihawi, Y Wang, L Jones, ...
arXiv preprint arXiv:2007.06225, 2020
Deep clustering of protein folding simulations
D Bhowmik, S Gao, MT Young, A Ramanathan
BMC bioinformatics 19 (18), 47-58, 2018
Aqueous solutions of tetraalkylammonium halides: ion hydration, dynamics and ion-ion interactions in light of steric effects
D Bhowmik, N Malikova, O Bernard, J Teixeira, P Turq
Physical Chemistry Chemical Physics 16 (26), 13447-13457, 2014
Single chain dynamic structure factor of linear polymers in an all-polymer nano-composite
A Arbe, JA Pomposo, I Asenjo-Sanz, D Bhowmik, O Ivanova, ...
Macromolecules 49 (6), 2354-2364, 2016
Mechanism of glucocerebrosidase activation and dysfunction in Gaucher disease unraveled by molecular dynamics and deep learning
R Romero, A Ramanathan, T Yuen, D Bhowmik, M Mathew, LB Munshi, ...
Proceedings of the National Academy of Sciences 116 (11), 5086-5095, 2019
Supercomputer-based ensemble docking drug discovery pipeline with application to COVID-19
A Acharya, R Agarwal, MB Baker, J Baudry, D Bhowmik, S Boehm, ...
Journal of chemical information and modeling 60 (12), 5832-5852, 2020
Microscopic dynamics in nanocomposites of poly (ethylene oxide) and poly (methyl methacrylate) soft nanoparticles: A quasi-elastic neutron scattering study
D Bhowmik, JA Pomposo, F Juranyi, V García-Sakai, M Zamponi, Y Su, ...
Macromolecules 47 (1), 304-315, 2014
Aqueous solutions of ionenes: interactions and counterion specific effects as seen by neutron scattering
N Malikova, S Čebašek, V Glenisson, D Bhowmik, G Carrot, V Vlachy
Physical Chemistry Chemical Physics 14 (37), 12898-12904, 2012
Effects of pressure on the dynamics of an oligomeric protein from deep-sea hyperthermophile
UR Shrestha, D Bhowmik, JRD Copley, M Tyagi, JB Leão, X Chu
Proceedings of the National Academy of Sciences 112 (45), 13886-13891, 2015
DeepDriveMD: Deep-learning driven adaptive molecular simulations for protein folding
H Lee, M Turilli, S Jha, D Bhowmik, H Ma, A Ramanathan
2019 IEEE/ACM Third Workshop on Deep Learning on Supercomputers (DLS), 12-19, 2019
Investigation of a nanocomposite of 75 wt% poly (methyl methacrylate) nanoparticles with 25 wt% poly (ethylene oxide) linear chains: a quasielatic neutron scattering …
D Bhowmik, JA Pomposo, F Juranyi, V García Sakai, M Zamponi, A Arbe, ...
Macromolecules 47 (9), 3005-3016, 2014
ProtTrans: Towards Cracking the Language of Life’s Code Through Self-Supervised Deep Learning and High Performance Computing. bioRxiv. 2020
A Elnaggar, M Heinzinger, C Dallago, G Rihawi, Y Wang, L Jones, ...
URL http://arxiv. org/abs, 2020
Enhanced Dynamics of Hydrated tRNA on Nanodiamond Surfaces: A Combined Neutron Scattering and MD Simulation Study
GK Dhindsa*, D Bhowmik* (*Equal Contribution), M Goswami, HM O'Neill, ...
The Journal of Physical Chemistry B, 2016
Characterization and calibration of a SSNTD for heavy-ion detection and strangelet search in cosmic rays
D Bhowmik, S Dey, A Maulik, S Raha, S Saha, SK Saha, D Syam
Nuclear Instruments and Methods in Physics Research Section B: Beam …, 2011
Quasi-elastic neutron scattering reveals ligand-induced protein dynamics of a G-protein-coupled receptor
UR Shrestha, SMDC Perera, D Bhowmik, U Chawla, E Mamontov, ...
The journal of physical chemistry letters 7 (20), 4130-4136, 2016
Study of tetrabutylammonium bromide in aqueous solution by neutron scattering
D Bhowmik*, N Malikova, J Teixeira, G Mériguet, O Bernard, P Turq, ...
The European Physical Journal Special Topics 213 (1), 303-312, 2012
Biochemical and structural analyses reveal that the tumor suppressor neurofibromin (NF1) forms a high-affinity dimer
M Sherekar, SW Han, R Ghirlando, S Messing, M Drew, D Rabara, ...
Journal of Biological Chemistry 295 (4), 1105-1119, 2020
Effect of molecular shape on rotation under severe confinement
I Dhiman, D Bhowmik, UR Shrestha, DR Cole, S Gautam
Chemical Engineering Science 180, 33-41, 2018
An automated analysis workflow for optimization of force-field parameters using neutron scattering data
VE Lynch, JM Borreguero, D Bhowmik, P Ganesh, BG Sumpter, ...
Journal of Computational Physics 340, 128-137, 2017
Small-angle neutron scattering reveals energy landscape for rhodopsin photoactivation
SMDC Perera, U Chawla, UR Shrestha, D Bhowmik, AV Struts, S Qian, ...
The journal of physical chemistry letters 9 (24), 7064-7071, 2018
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