Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 895 | 2016 |
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry BC Collins, CL Hunter, Y Liu, B Schilling, G Rosenberger, SL Bader, ... Nature communications 8 (1), 291, 2017 | 505 | 2017 |
Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko, L Chen, KR Clauser, ... Nature protocols 13 (7), 1632-1661, 2018 | 395 | 2018 |
Alzheimer disease-specific conformation of hyperphosphorylated paired helical filament-Tau is polyubiquitinated through Lys-48, Lys-11, and Lys-6 ubiquitin conjugation D Cripps, SN Thomas, Y Jeng, F Yang, P Davies, AJ Yang Journal of Biological Chemistry 281 (16), 10825-10838, 2006 | 347 | 2006 |
Advances in mass spectrometry-based clinical biomarker discovery CA Crutchfield, SN Thomas, LJ Sokoll, DW Chan Clinical proteomics 13 (1), 1-12, 2016 | 277 | 2016 |
Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry–Based Assays AN Hoofnagle, JR Whiteaker, SA Carr, E Kuhn, T Liu, SA Massoni, ... Clinical Chemistry 62 (1), 48-69, 2016 | 215 | 2016 |
CPTAC Assay Portal: a repository of targeted proteomic assays JR Whiteaker, GN Halusa, AN Hoofnagle, V Sharma, B MacLean, P Yan, JA Wrobel ... Nat Methods 11 (7), 703-704, 2014 | 167 | 2014 |
Proteomic analysis of exfoliation deposits B Ovodenko, A Rostagno, TA Neubert, V Shetty, S Thomas, A Yang, ... Investigative ophthalmology and visual science 48 (4), 1447-1457, 2007 | 164 | 2007 |
Lysine methylation is an endogenous post-translational modification of tau protein in human brain and a modulator of aggregation propensity KE Funk, SN Thomas, KN Schafer, GL Cooper, Z Liao, DJ Clark, AJ Yang, ... Biochemical Journal 462 (1), 77-88, 2014 | 144 | 2014 |
High-throughput proteomic-based identification of oxidatively induced protein carbonylation in mouse brain BA Soreghan, F Yang, SN Thomas, J Hsu, AJ Yang Pharmaceutical research 20, 1713-1720, 2003 | 140 | 2003 |
Doxorubicin Down-regulates Krüppel-associated Box Domain-associated Protein 1 Sumoylation That Relieves Its Transcription Repression on p21WAF1/CIP1 in Breast Cancer MCF-7 Cells YK Lee, SN Thomas, AJ Yang, DK Ann Journal of Biological Chemistry 282 (3), 1595-1606, 2007 | 133 | 2007 |
Dual modification of Alzheimer’s disease PHF-tau protein by lysine methylation and ubiquitylation: a mass spectrometry approach SN Thomas, KE Funk, Y Wan, Z Liao, P Davies, J Kuret, AJ Yang Acta neuropathologica 123, 105-117, 2012 | 126 | 2012 |
Integrated proteomic and glycoproteomic characterization of human high-grade serous ovarian carcinoma Y Hu, J Pan, P Shah, M Ao, SN Thomas, Y Liu, L Chen, M Schnaubelt, ... Cell reports 33 (3), 2020 | 98 | 2020 |
Site-specific fucosylation analysis identifying glycoproteins associated with aggressive prostate cancer cell lines using tandem affinity enrichments of intact glycopeptides … J Zhou, W Yang, Y Hu, N Hoti, Y Liu, P Shah, S Sun, D Clark, S Thomas, ... Analytical chemistry 89 (14), 7623-7630, 2017 | 75 | 2017 |
Aberrant sphingomyelin/ceramide metabolic-induced neuronal endosomal/lysosomal dysfunction: potential pathological consequences in age-related neurodegeneration B Soreghan, SN Thomas, AJ Yang Advanced drug delivery reviews 55 (11), 1515-1524, 2003 | 71 | 2003 |
N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping S Sun, Y Hu, M Ao, P Shah, J Chen, W Yang, X Jia, Y Tian, S Thomas, ... Clinical proteomics 16 (1), 1-11, 2019 | 67 | 2019 |
Exosomal Proteome Profiling: A Potential Multi-Marker Cellular Phenotyping Tool to Characterize Hypoxia-Induced Radiation Resistance in Breast Cancer SN Thomas, Z Liao, D Clark, Y Chen, R Samadani, L Mao, DK Ann, ... Proteomes 1 (2), 87-108, 2013 | 57 | 2013 |
Molecular features of phosphatase and tensin homolog (PTEN) Regulation by C-terminal phosphorylation Z Chen, DR Dempsey, SN Thomas, D Hayward, DM Bolduc, PA Cole Journal of Biological Chemistry 291 (27), 14160-14169, 2016 | 56 | 2016 |
Liquid chromatography–tandem mass spectrometry for clinical diagnostics SN Thomas, D French, PJ Jannetto, BA Rappold, WA Clarke Nature Reviews Methods Primers 2 (1), 96, 2022 | 51 | 2022 |
Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays JR Whiteaker, GN Halusa, AN Hoofnagle, V Sharma, B MacLean, P Yan, ... Quantitative Proteomics by Mass Spectrometry, 223-236, 2016 | 44 | 2016 |