| A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants R Shahan, CW Hsu, TM Nolan, BJ Cole, IW Taylor, L Greenstreet, ... Developmental cell 57 (4), 543-560. e9, 2022 | 143 | 2022 |
| Towards a mathematical theory of trajectory inference H Lavenant, S Zhang, YH Kim, G Schiebinger arXiv preprint arXiv:2102.09204, 2021 | 33 | 2021 |
| Optimal transport analysis reveals trajectories in steady-state systems S Zhang, A Afanassiev, L Greenstreet, T Matsumoto, G Schiebinger PLoS computational biology 17 (12), e1009466, 2021 | 22 | 2021 |
| Trajectory Inference via Mean-field Langevin in Path Space L Chizat, S Zhang, M Heitz, G Schiebinger arXiv preprint arXiv:2205.07146, 2022 | 16 | 2022 |
| Persistent exclusion processes: Inertia, drift, mixing, and correlation S Zhang, A Chong, BD Hughes Physical Review E 100 (4), 042415, 2019 | 9 | 2019 |
| Manifold learning with sparse regularised optimal transport S Zhang, G Mordant, T Matsumoto, G Schiebinger arXiv preprint arXiv:2307.09816, 2023 | 7* | 2023 |
| Learning cell-specific networks from dynamics and geometry of single cells SY Zhang, MPH Stumpf bioRxiv, 2023.01. 08.523176, 2023 | 5* | 2023 |
| A unified framework for non-negative matrix and tensor factorisations with a smoothed Wasserstein loss SY Zhang Proceedings of the IEEE/CVF International Conference on Computer Vision …, 2021 | 5 | 2021 |
| Hematopoiesis at single cell resolution spanning human development and maturation H Li, J Ezike, A Afanassiev, L Greenstreet, S Zhang, J Whangbo, VL Butty, ... bioRxiv, 2021.08. 25.457678, 2021 | 2 | 2021 |
| LoxCode in vivo barcoding resolves epiblast clonal fate to fetal organs TS Weber, C Biben, DC Miles, S Glaser, S Tomei, S Zhang, PPL Tam, ... bioRxiv, 2023.01. 02.522501, 2023 | 1 | 2023 |
| Topological Optimal Transport for Geometric Cycle Matching SY Zhang, MPH Stumpf, T Needham, A Barbensi arXiv preprint arXiv:2403.19097, 2024 | | 2024 |
| Toward a mathematical theory of trajectory inference H Lavenant, S Zhang, YH Kim, G Schiebinger The Annals of Applied Probability 34 (1A), 428-500, 2024 | | 2024 |
| A multi-track landscape of haematopoiesis informed by cellular barcoding and agent-based modelling D Lin, S Zhang, J Schreuder, J Tran, D Metcalf, T Sargeant, AP Ng, ... bioRxiv, 2024.03. 28.587126, 2024 | | 2024 |
| The Topological Properties of the Protein Universe CD Madsen, A Barbensi, SY Zhang, L Ham, A David, DEV Pires, ... bioRxiv, 2023.09. 25.559443, 2023 | | 2023 |
| Approximate Bayesian Computation for Inferring Waddington Landscapes from Single Cell Data Y Liu, SY Zhang, IT Kleijn, MPH Stumpf bioRxiv, 2023.09. 03.556134, 2023 | | 2023 |
| HUMAN HEMATOPOIETIC STEM CELL ONTOGENY ACROSS DEVELOPMENT AND MATURATION G Rowe, H Li, P Cote, M Kuoch, J Ezike, A Afanassiev, L Greenstreet, ... EXPERIMENTAL HEMATOLOGY 111, S40-S40, 2022 | | 2022 |
| 2017–HUMAN HEMATOPOIETIC STEM CELL ONTOGENY ACROSS DEVELOPMENT AND MATURATION G Rowe, H Li, P Cote, M Kuoch, J Ezike, A Afanassiev, L Greenstreet, ... Experimental Hematology 111, S39-S40, 2022 | | 2022 |
| Dynamical inference for biological processes through the lens of optimal transport SY Zhang University of British Columbia, 2021 | | 2021 |
| Single Cell Analysis Elucidates the Maturation of Human Stem and Progenitor Cell Function from Fetal through Adult Hematopoiesis H Li, J Ezike, A Afanassiev, L Greenstreet, S Zhang, JS Whangbo, V Butty, ... Blood 138, 1079, 2021 | | 2021 |
Geoffrey SchiebingerUniversity of British ColumbiaVerified email at math.ubc.ca
