| MotifMap: integrative genome-wide maps of regulatory motif sites for model species K Daily, VR Patel, P Rigor, X Xie, P Baldi BMC bioinformatics 12, 1-13, 2011 | 197 | 2011 |
| A CROC stronger than ROC: measuring, visualizing and optimizing early retrieval SJ Swamidass, CA Azencott, K Daily, P Baldi Bioinformatics 26 (10), 1348-1356, 2010 | 131 | 2010 |
| Integrated genomic analysis of diverse induced pluripotent stem cells from the progenitor cell biology consortium N Salomonis, PJ Dexheimer, L Omberg, R Schroll, S Bush, J Huo, ... Stem cell reports 7 (1), 110-125, 2016 | 120 | 2016 |
| GRHL3/GET1 and trithorax group members collaborate to activate the epidermal progenitor differentiation program AS Hopkin, W Gordon, RH Klein, F Espitia, K Daily, M Zeller, P Baldi, ... PLoS genetics 8 (7), e1002829, 2012 | 101 | 2012 |
| Data structures and compression algorithms for high-throughput sequencing technologies K Daily, P Rigor, S Christley, X Xie, P Baldi BMC bioinformatics 11, 1-12, 2010 | 73 | 2010 |
| Intrinsic Disorder and Protein Modifications: Building an SVM Predictor for Methylation KM Daily, P Radivojac, AK Dunker Computational Intelligence in Bioinformatics and Computational Biology, 2005 …, 2005 | 67 | 2005 |
| Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives K Daily, SJ Ho Sui, LM Schriml, PJ Dexheimer, N Salomonis, R Schroll, ... Scientific data 4 (1), 1-10, 2017 | 65 | 2017 |
| Assessment of cancer cell line representativeness using microarrays for Merkel cell carcinoma K Daily, A Coxon, JS Williams, CCR Lee, DG Coit, KJ Busam, I Brownell Journal of Investigative Dermatology 135 (4), 1138-1146, 2015 | 45 | 2015 |
| Evaluating blood levels of neuron specific enolase, chromogranin A, and circulating tumor cells as Merkel cell carcinoma biomarkers MR Gaiser, K Daily, J Hoffmann, M Brune, A Enk, I Brownell Oncotarget 6 (28), 26472, 2015 | 42 | 2015 |
| Retrotransposon profiling of RNA polymerase III initiation sites X Qi, K Daily, K Nguyen, H Wang, D Mayhew, P Rigor, S Forouzan, ... Genome research 22 (4), 681-692, 2012 | 39 | 2012 |
| Comprehensive identification of somatic nucleotide variants in human brain tissue Y Wang, T Bae, J Thorpe, MA Sherman, AG Jones, S Cho, K Daily, Y Dou, ... Genome biology 22, 1-32, 2021 | 34 | 2021 |
| DEGreport: Report of DEG analysis. R package version 1.26. 0 L Pantano, J Hutchinson, V Barrera, M Piper, R Khetani, K Dally, ... | 21 | 2022 |
| Identifying and ranking potential driver genes of Alzheimer’s disease using multiview evidence aggregation S Mukherjee, TM Perumal, K Daily, SK Sieberts, L Omberg, C Preuss, ... Bioinformatics 35 (14), i568-i576, 2019 | 14 | 2019 |
| A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses SM Gross, MA Dane, RL Smith, KL Devlin, IC McLean, DS Derrick, ... Communications biology 5 (1), 1066, 2022 | 13 | 2022 |
| Agora: an open platform for exploration of alzheimer’s disease evidence: genetics/omics and systems biology AK Greenwood, J Gockley, K Daily, D Aluthgamage, Z Leanza, ... Alzheimer's & Dementia 16, e046129, 2020 | 12 | 2020 |
| Hedgehog signaling inhibitors fail to reduce Merkel cell carcinoma viability TM Carroll, JS Williams, K Daily, T Rogers, T Gelb, A Coxon, SQ Wang, ... The Journal of investigative dermatology 137 (5), 1187, 2017 | 9 | 2017 |
| A LINCS microenvironment perturbation resource for integrative assessment of ligand-mediated molecular and phenotypic responses SM Gross, MA Dane, RL Smith, K Devlin, I McLean, D Derrick, C Mills, ... bioRxiv, 2021.08. 06.455429, 2021 | 5 | 2021 |
| Up For A Challenge (U4C): Stimulating innovation in breast cancer genetic epidemiology LE Mechanic, S Lindström, KM Daily, SK Sieberts, CI Amos, HS Chen, ... PLoS genetics 13 (9), e1006945, 2017 | 3 | 2017 |
| Single cell tracking based on Voronoi partition via stable matching YH Chang, J Linsley, J Lamstein, J Kalra, I Epstein, M Barch, K Daily, ... 2020 59th IEEE Conference on Decision and Control (CDC), 5086-5091, 2020 | 2 | 2020 |
| UISO cell line is not representative of Merkel cell carcinoma tumors k Daily, A Coxon, JS Williams, C Lee, DG Coit, KJ Busam, I Brownell Journal of Investigative Dermatology 133, S71-S71, 2013 | 1 | 2013 |
Pierre BaldiProfessor, University of California, IrvineVerified email at ics.uci.edu
