John Eargle

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Zaida (Zan) Luthey-SchultenUniversity of Illinois at Urbana-ChampaignVerified email at illinois.edu
Anurag SethiCalico Life Sciences LLCVerified email at calicolabs.com
Daniel WrightAspire UniversityVerified email at aspire.university
Elijah RobertsJohns Hopkins UniversityVerified email at jhu.edu
Leonardo TrabucoPostdoctoral Research Fellow, University of HeidelbergVerified email at bioquant.uni-heidelberg.de
Rommie E. AmaroDistinguished Professorship in Theoretical and Computational Chemistry, UC San Diego.Verified email at ucsd.edu
Taekjip HaJohns Hopkins UniversityVerified email at jhu.edu
Ke ChenUniversity of California, San DiegoVerified email at eng.ucsd.edu
Klaus SchultenProfessor of Physics, University of Illinois at Urbana-ChampaignVerified email at ks.uiuc.edu
Peter CornishUniversity of MissouriVerified email at missouri.edu
Dan BolserFree ManVerified email at ebi.ac.uk
Nicolas PalopoliUniversidad Nacional de QuilmesVerified email at unq.edu.ar
Paolo RomanoUniversity of SassariVerified email at uniss.it
Prashanth N. SuravajhalaPrincipal Scientist, Systems Genomics, Amrita School of Biotechnology, Amrita Vishwa VidyapeethamVerified email at am.amrita.edu
Nicholas ProvartProfessor and Departmental Chair, Cell & Systems Biology, University of TorontoVerified email at utoronto.ca
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, AustraliaVerified email at flinders.edu.au
Sungsam GongDepartment of Obstetrics and Gynaecology, University of CambridgeVerified email at cam.ac.uk
Daniel JACOBResearch Engineer, Computer ScienceVerified email at inrae.fr
David L ClementsImperial College LondonVerified email at imperial.ac.uk
Megan MayerleStanford UniversityVerified email at Stanford.edu

John Eargle

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Evolution Translation Molecular Dynamics Network Theory


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Dynamical networks in tRNA: protein complexes A Sethi, J Eargle, AA Black, Z Luthey-Schulten Proceedings of the National Academy of Sciences 106 (16), 6620-6625, 2009	789	2009
MultiSeq: unifying sequence and structure data for evolutionary analysis E Roberts, J Eargle, D Wright, Z Luthey-Schulten BMC bioinformatics 7, 1-11, 2006	444	2006
NetworkView: 3D display and analysis of protein·RNA interaction networks J Eargle, Z Luthey-Schulten Bioinformatics 28 (22), 3000-3001, 2012	205	2012
Multiple Alignment of protein structures and sequences for VMD J Eargle, D Wright, Z Luthey-Schulten Bioinformatics 22 (4), 504-506, 2006	191	2006
Exploring residue component contributions to dynamical network models of allostery AT VanWart, J Eargle, Z Luthey-Schulten, RE Amaro Journal of chemical theory and computation 8 (8), 2949-2961, 2012	181	2012
The role of L1 stalk–tRNA interaction in the ribosome elongation cycle LG Trabuco, E Schreiner, J Eargle, P Cornish, T Ha, Z Luthey-Schulten, ... Journal of molecular biology 402 (4), 741-760, 2010	137	2010
Dynamics of recognition between tRNA and elongation factor Tu J Eargle, AA Black, A Sethi, LG Trabuco, Z Luthey-Schulten Journal of molecular biology 377 (5), 1382-1405, 2008	111	2008
Experimental and computational determination of tRNA dynamics RW Alexander, J Eargle, Z Luthey-Schulten FEBS letters 584 (2), 376-386, 2010	82	2010
MetaBase—the wiki-database of biological databases DM Bolser, PY Chibon, N Palopoli, S Gong, D Jacob, VD Del Angel, ... Nucleic Acids Research 40 (D1), D1250-D1254, 2012	68	2012
Exit strategies for charged tRNA from GluRS AB Pyrkosz, J Eargle, A Sethi, Z Luthey-Schulten Journal of molecular biology 397 (5), 1350-1371, 2010	40	2010
Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Go simulations K Chen, J Eargle, J Lai, H Kim, S Abeysirigunawardena, M Mayerle, ... The Journal of Physical Chemistry B 116 (23), 6819-6831, 2012	28	2012
Functional role of ribosomal signatures K Chen, J Eargle, K Sarkar, M Gruebele, Z Luthey-Schulten Biophysical journal 99 (12), 3930-3940, 2010	27	2010
Dynamical Network Analysis J Stone, NT Developers, J Eargle, A Sethi, L Li, Z Luthey-Schulten	11	2012
Simulating dynamics in RNA–protein complexes J Eargle, Z Luthey-Schulten RNA 3D Structure Analysis and Prediction, 213-238, 2012	6	2012
Evolution of biomolecular structure E Roberts, J Eargle, D Wright, Z Luthey-Schulten, P O’Donoghue, A Sethi, ...	5	2006
Visualizing the dual space of biological molecules J Eargle, Z Luthey-Schulten Computational Biology and Chemistry 30 (3), 219-226, 2006	2	2006
Simulation and visualization of dynamics in RNA· protein complexes in translation J Eargle University of Illinois at Urbana-Champaign, 2010	1	2010
Evolution of Translation The Ribosome J Stone, MS Developers, E Roberts, K Chen, J Eargle, D Wright, T Earnest, ...		2015
Evolution of Translation EF-Tu: tRNA J Stone, MS Developers, E Roberts, K Chen, J Eargle, D Wright, ...		2014
Dynamical network models of allostery for hisH-hisF without alpha-carbons AT VanWart, J Eargle, Z Luthey-Schulten, RE Amaro ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 245, 2013		2013

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