Determination and inference of eukaryotic transcription factor sequence specificity MT Weirauch, A Yang, M Albu, AG Cote, A Montenegro-Montero, P Drewe, ... Cell 158 (6), 1431-1443, 2014 | 1685 | 2014 |
A compendium of RNA-binding motifs for decoding gene regulation D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ... Nature 499 (7457), 172-177, 2013 | 1489 | 2013 |
The sequence and de novo assembly of the giant panda genome R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ... Nature 463 (7279), 311-317, 2010 | 1375 | 2010 |
RBPDB: a database of RNA-binding specificities KB Cook, H Kazan, K Zuberi, Q Morris, TR Hughes Nucleic acids research 39 (suppl_1), D301-D308, 2010 | 584 | 2010 |
Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages EM Bunnik, KB Cook, N Varoquaux, G Batugedara, J Prudhomme, A Cort, ... Nature communications 9 (1), 1910, 2018 | 104 | 2018 |
Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition JD Laver, X Li, D Ray, KB Cook, NA Hahn, S Nabeel-Shah, M Kekis, ... Genome biology 16, 1-30, 2015 | 100 | 2015 |
High-throughput characterization of protein–RNA interactions KB Cook, TR Hughes, QD Morris Briefings in functional genomics 14 (1), 74-89, 2015 | 98 | 2015 |
The crystal structure of the NHL domain in complex with RNA reveals the molecular basis of Drosophila brain-tumor-mediated gene regulation I Loedige, L Jakob, T Treiber, D Ray, M Stotz, N Treiber, J Hennig, ... Cell reports 13 (6), 1206-1220, 2015 | 87 | 2015 |
The dynamic three-dimensional organization of the diploid yeast genome S Kim, I Liachko, DG Brickner, K Cook, WS Noble, JH Brickner, ... Elife 6, e23623, 2017 | 63 | 2017 |
Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features DF Read, K Cook, YY Lu, KG Le Roch, WS Noble PLoS computational biology 15 (9), e1007329, 2019 | 45 | 2019 |
RNAcompete-S: Combined RNA sequence/structure preferences for RNA binding proteins derived from a single-step in vitro selection KB Cook, S Vembu, KCH Ha, H Zheng, KU Laverty, TR Hughes, D Ray, ... Methods 126, 18-28, 2017 | 43 | 2017 |
Paralogs hnRNP L and hnRNP LL exhibit overlapping but distinct RNA binding constraints SA Smith, D Ray, KB Cook, MJ Mallory, TR Hughes, KW Lynch PLoS One 8 (11), e80701, 2013 | 40 | 2013 |
Retrieval of aerosol physical and chemical properties from mid-infrared extinction spectra AY Zasetsky, ME Earle, B Cosic, R Schiwon, IA Grishin, R McPhail, ... Journal of Quantitative Spectroscopy and Radiative Transfer 107 (2), 294-305, 2007 | 23 | 2007 |
Measuring significant changes in chromatin conformation with ACCOST KB Cook, BH Hristov, KG Le Roch, JP Vert, WS Noble Nucleic acids research 48 (5), 2303-2311, 2020 | 21 | 2020 |